miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12494 5' -53.8 NC_003324.1 + 4644 0.66 0.796928
Target:  5'- gGCcUGgaccuGCGCGCGCUcGAUcacGGCGCg -3'
miRNA:   3'- gCGuAC-----UGCGUGCGA-CUAaa-CCGCGa -5'
12494 5' -53.8 NC_003324.1 + 14476 0.66 0.776902
Target:  5'- gGCGUu-UGCGCGCUcGGUUgcGGCGCg -3'
miRNA:   3'- gCGUAcuGCGUGCGA-CUAAa-CCGCGa -5'
12494 5' -53.8 NC_003324.1 + 26803 0.66 0.766651
Target:  5'- aCGCGgccguGCGcUugGCUGGcUUUGGCGCc -3'
miRNA:   3'- -GCGUac---UGC-GugCGACU-AAACCGCGa -5'
12494 5' -53.8 NC_003324.1 + 37685 0.66 0.766651
Target:  5'- cCGCAUGACgGUGCGUUuGUcauaGGCGCUc -3'
miRNA:   3'- -GCGUACUG-CGUGCGAcUAaa--CCGCGA- -5'
12494 5' -53.8 NC_003324.1 + 48806 0.66 0.766651
Target:  5'- uGC-UGGCGCcgACGCgg--UUGGCGCc -3'
miRNA:   3'- gCGuACUGCG--UGCGacuaAACCGCGa -5'
12494 5' -53.8 NC_003324.1 + 21163 0.67 0.713496
Target:  5'- aGCG-GGCGCGCGacuUGAUacGGUGCUg -3'
miRNA:   3'- gCGUaCUGCGUGCg--ACUAaaCCGCGA- -5'
12494 5' -53.8 NC_003324.1 + 10387 0.67 0.702568
Target:  5'- aGCG-GAUGCACGCggcgGAacguggUGGCGUa -3'
miRNA:   3'- gCGUaCUGCGUGCGa---CUaa----ACCGCGa -5'
12494 5' -53.8 NC_003324.1 + 8374 0.69 0.591263
Target:  5'- gCGgAUGACGCugGCUGcgacGGCGaCg -3'
miRNA:   3'- -GCgUACUGCGugCGACuaaaCCGC-Ga -5'
12494 5' -53.8 NC_003324.1 + 39162 0.71 0.483218
Target:  5'- gCGCGcGGCGaCACGUUGAaUUGGCuGCa -3'
miRNA:   3'- -GCGUaCUGC-GUGCGACUaAACCG-CGa -5'
12494 5' -53.8 NC_003324.1 + 45156 0.73 0.385578
Target:  5'- uGCcUGGCGCguucgaaguaggACGC-GAUUUGGCGCUc -3'
miRNA:   3'- gCGuACUGCG------------UGCGaCUAAACCGCGA- -5'
12494 5' -53.8 NC_003324.1 + 50194 0.75 0.301893
Target:  5'- gGCAUGGCGC-CGCUGAUaucUGGgGUa -3'
miRNA:   3'- gCGUACUGCGuGCGACUAa--ACCgCGa -5'
12494 5' -53.8 NC_003324.1 + 55448 1.08 0.001555
Target:  5'- aCGCAUGACGCACGCUGAUUUGGCGCUc -3'
miRNA:   3'- -GCGUACUGCGUGCGACUAAACCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.