miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12496 5' -53.5 NC_003324.1 + 21929 0.69 0.633343
Target:  5'- -cCGCCGAGGAGGCcc----GGCUGCg -3'
miRNA:   3'- uaGUGGUUCCUUCGuuagcuCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 35733 0.69 0.622103
Target:  5'- -cCGCCAagaAGGAGGC---CGAGGCCa- -3'
miRNA:   3'- uaGUGGU---UCCUUCGuuaGCUCCGGcg -5'
12496 5' -53.5 NC_003324.1 + 39816 0.69 0.622103
Target:  5'- -aCACCAAGGccGCcauGUgGuGGCUGCa -3'
miRNA:   3'- uaGUGGUUCCuuCGu--UAgCuCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 27765 0.7 0.581784
Target:  5'- cAUCGCCAAGGAgaAGC--UCGGcgccacgcaugagguGGUCGCg -3'
miRNA:   3'- -UAGUGGUUCCU--UCGuuAGCU---------------CCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 56141 0.7 0.577331
Target:  5'- uUCGCCAGccuGGAAGC---CGAcGGCCGUg -3'
miRNA:   3'- uAGUGGUU---CCUUCGuuaGCU-CCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 26551 0.7 0.577331
Target:  5'- --uGCCGAGGucGAGCAAUUGAuGUCGCc -3'
miRNA:   3'- uagUGGUUCC--UUCGUUAGCUcCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 40327 0.7 0.555192
Target:  5'- -gCACgCAAGGcGGCAGUCGAGcgggaGCCaGCa -3'
miRNA:   3'- uaGUG-GUUCCuUCGUUAGCUC-----CGG-CG- -5'
12496 5' -53.5 NC_003324.1 + 39956 0.71 0.511739
Target:  5'- gAUCGgCAAGGAAGCGgccgacaagaagGUCGAGGacaGCc -3'
miRNA:   3'- -UAGUgGUUCCUUCGU------------UAGCUCCgg-CG- -5'
12496 5' -53.5 NC_003324.1 + 32163 0.71 0.511739
Target:  5'- --aGCCGAGGc-GCAG-CGAGGCCGa -3'
miRNA:   3'- uagUGGUUCCuuCGUUaGCUCCGGCg -5'
12496 5' -53.5 NC_003324.1 + 32440 0.71 0.480093
Target:  5'- uUCACCGgcuacAGGAAGCcgggCGAuGCCGCu -3'
miRNA:   3'- uAGUGGU-----UCCUUCGuua-GCUcCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 24574 0.71 0.479054
Target:  5'- cGUCACCGcugcGGGcgaccAGCGcaggaucAUCGGGGCCGUa -3'
miRNA:   3'- -UAGUGGU----UCCu----UCGU-------UAGCUCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 56295 0.72 0.459536
Target:  5'- uGUCGCCGccGAucgAGCGAUaggCGAGGCUGCc -3'
miRNA:   3'- -UAGUGGUucCU---UCGUUA---GCUCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 29081 0.72 0.449434
Target:  5'- --uGCUAAGGAAGCGAaaUCGAcGCUGCc -3'
miRNA:   3'- uagUGGUUCCUUCGUU--AGCUcCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 49460 0.72 0.429605
Target:  5'- uUUGCCcGGGucGCuuUCGAGGUCGCc -3'
miRNA:   3'- uAGUGGuUCCuuCGuuAGCUCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 14894 0.73 0.4103
Target:  5'- -cCGCCcAGGAAGCugcCGAugccGGCCGCg -3'
miRNA:   3'- uaGUGGuUCCUUCGuuaGCU----CCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 29666 0.74 0.363599
Target:  5'- uUCugcCCGAGGAaucgAGCGAcgaggccUUGAGGCCGCu -3'
miRNA:   3'- uAGu--GGUUCCU----UCGUU-------AGCUCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 49264 0.74 0.338735
Target:  5'- --gAUCGAGGAGcCGAUCGAGGCUGUc -3'
miRNA:   3'- uagUGGUUCCUUcGUUAGCUCCGGCG- -5'
12496 5' -53.5 NC_003324.1 + 56290 1.11 0.001005
Target:  5'- gAUCACCAAGGAAGCAAUCGAGGCCGCa -3'
miRNA:   3'- -UAGUGGUUCCUUCGUUAGCUCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.