miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12497 5' -65.2 NC_003324.1 + 26797 0.66 0.22793
Target:  5'- -gGCCCGCG-CCC-UGCUgcgucgcaaGCUGUCCGg -3'
miRNA:   3'- aaCGGGCGCuGGGuACGG---------CGGCGGGU- -5'
12497 5' -65.2 NC_003324.1 + 6148 0.66 0.22793
Target:  5'- cUGaCCCGCGccGCCUggaAUG-CGCUGCCCGa -3'
miRNA:   3'- aAC-GGGCGC--UGGG---UACgGCGGCGGGU- -5'
12497 5' -65.2 NC_003324.1 + 23268 0.66 0.239516
Target:  5'- cUUGCCCGgaaGGCUCAgaUGCgCGCCGUCa- -3'
miRNA:   3'- -AACGGGCg--CUGGGU--ACG-GCGGCGGgu -5'
12497 5' -65.2 NC_003324.1 + 51532 0.66 0.245492
Target:  5'- -gGCCgGUGGCUUggGCUGCCGUCUu -3'
miRNA:   3'- aaCGGgCGCUGGGuaCGGCGGCGGGu -5'
12497 5' -65.2 NC_003324.1 + 54868 0.66 0.251591
Target:  5'- --cCCCGCaGGCCCGgaugcucgcgaUGUCGgCGCCCGc -3'
miRNA:   3'- aacGGGCG-CUGGGU-----------ACGGCgGCGGGU- -5'
12497 5' -65.2 NC_003324.1 + 21477 0.66 0.257814
Target:  5'- -aGCUCGUuGCCCugccggAUGCCGC-GCCCGu -3'
miRNA:   3'- aaCGGGCGcUGGG------UACGGCGgCGGGU- -5'
12497 5' -65.2 NC_003324.1 + 1607 0.66 0.239516
Target:  5'- -aGCgCCGCGcACCacUGCCGCCggauccucgcugGCCCGg -3'
miRNA:   3'- aaCG-GGCGC-UGGguACGGCGG------------CGGGU- -5'
12497 5' -65.2 NC_003324.1 + 50491 0.66 0.231355
Target:  5'- -cGCCuUGCGGCaggguucaccgaaCAUGUCGCgGCCCGg -3'
miRNA:   3'- aaCGG-GCGCUGg------------GUACGGCGgCGGGU- -5'
12497 5' -65.2 NC_003324.1 + 10659 0.66 0.22793
Target:  5'- gUUGCCUGC-AUCCGcugcacuguUGCUGuuGCCCGa -3'
miRNA:   3'- -AACGGGCGcUGGGU---------ACGGCggCGGGU- -5'
12497 5' -65.2 NC_003324.1 + 26687 0.66 0.22793
Target:  5'- gUGCCCGU-ACCUucGUCGCCuauGCCCAa -3'
miRNA:   3'- aACGGGCGcUGGGuaCGGCGG---CGGGU- -5'
12497 5' -65.2 NC_003324.1 + 49227 0.67 0.206179
Target:  5'- -cGCCUGCGACgCCAUGaUCGggcaGCCCGa -3'
miRNA:   3'- aaCGGGCGCUG-GGUAC-GGCgg--CGGGU- -5'
12497 5' -65.2 NC_003324.1 + 9745 0.67 0.216821
Target:  5'- -cGCCCG-GcCCCA---CGCCGCCCAg -3'
miRNA:   3'- aaCGGGCgCuGGGUacgGCGGCGGGU- -5'
12497 5' -65.2 NC_003324.1 + 30061 0.67 0.216821
Target:  5'- -gGCCgggaucgaUGCgGACCCGgcUGCCGCCGCUa- -3'
miRNA:   3'- aaCGG--------GCG-CUGGGU--ACGGCGGCGGgu -5'
12497 5' -65.2 NC_003324.1 + 55129 0.67 0.211442
Target:  5'- -cGCCguCGCGgcaGCCCA-GCCGuCCGCCUu -3'
miRNA:   3'- aaCGG--GCGC---UGGGUaCGGC-GGCGGGu -5'
12497 5' -65.2 NC_003324.1 + 29331 0.67 0.201029
Target:  5'- -aGCCCGgcgaugcaGGCCCGaacaGCCGCCGUCUu -3'
miRNA:   3'- aaCGGGCg-------CUGGGUa---CGGCGGCGGGu -5'
12497 5' -65.2 NC_003324.1 + 30378 0.67 0.211442
Target:  5'- -cGCCCuCGGC-CAUGCCGCC-CUCGa -3'
miRNA:   3'- aaCGGGcGCUGgGUACGGCGGcGGGU- -5'
12497 5' -65.2 NC_003324.1 + 17410 0.67 0.191065
Target:  5'- -aGUCCGCGugCCAcGUCGCC-CUCGu -3'
miRNA:   3'- aaCGGGCGCugGGUaCGGCGGcGGGU- -5'
12497 5' -65.2 NC_003324.1 + 56950 0.67 0.206179
Target:  5'- -gGCauCCGCG-CCCucGCCGCCGCUCc -3'
miRNA:   3'- aaCG--GGCGCuGGGuaCGGCGGCGGGu -5'
12497 5' -65.2 NC_003324.1 + 8260 0.67 0.222316
Target:  5'- uUUGCCUGCGAgcgggacaacgUCCGUaGUCGUCGCCg- -3'
miRNA:   3'- -AACGGGCGCU-----------GGGUA-CGGCGGCGGgu -5'
12497 5' -65.2 NC_003324.1 + 35363 0.68 0.186247
Target:  5'- gUGCCUGguCGGCCUGUGCUGCUGCagCCu -3'
miRNA:   3'- aACGGGC--GCUGGGUACGGCGGCG--GGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.