Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12497 | 5' | -65.2 | NC_003324.1 | + | 18110 | 0.69 | 0.155437 |
Target: 5'- -cGCCuauCGCauGGCCCGUGgCGCCGgCCAa -3' miRNA: 3'- aaCGG---GCG--CUGGGUACgGCGGCgGGU- -5' |
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12497 | 5' | -65.2 | NC_003324.1 | + | 13807 | 0.71 | 0.104459 |
Target: 5'- --uCCCGCGucAUCCAgugccUGCCGCCGUCCGa -3' miRNA: 3'- aacGGGCGC--UGGGU-----ACGGCGGCGGGU- -5' |
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12497 | 5' | -65.2 | NC_003324.1 | + | 49950 | 0.71 | 0.096352 |
Target: 5'- uUUGCCCGcCGGCUCAcuUGCCGuacuCCGCCUu -3' miRNA: 3'- -AACGGGC-GCUGGGU--ACGGC----GGCGGGu -5' |
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12497 | 5' | -65.2 | NC_003324.1 | + | 6605 | 0.72 | 0.084149 |
Target: 5'- -aGCUCGCaGACCC-UGCCGUgGCUCAg -3' miRNA: 3'- aaCGGGCG-CUGGGuACGGCGgCGGGU- -5' |
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12497 | 5' | -65.2 | NC_003324.1 | + | 29331 | 0.67 | 0.201029 |
Target: 5'- -aGCCCGgcgaugcaGGCCCGaacaGCCGCCGUCUu -3' miRNA: 3'- aaCGGGCg-------CUGGGUa---CGGCGGCGGGu -5' |
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12497 | 5' | -65.2 | NC_003324.1 | + | 55129 | 0.67 | 0.211442 |
Target: 5'- -cGCCguCGCGgcaGCCCA-GCCGuCCGCCUu -3' miRNA: 3'- aaCGG--GCGC---UGGGUaCGGC-GGCGGGu -5' |
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12497 | 5' | -65.2 | NC_003324.1 | + | 30061 | 0.67 | 0.216821 |
Target: 5'- -gGCCgggaucgaUGCgGACCCGgcUGCCGCCGCUa- -3' miRNA: 3'- aaCGG--------GCG-CUGGGU--ACGGCGGCGGgu -5' |
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12497 | 5' | -65.2 | NC_003324.1 | + | 9745 | 0.67 | 0.216821 |
Target: 5'- -cGCCCG-GcCCCA---CGCCGCCCAg -3' miRNA: 3'- aaCGGGCgCuGGGUacgGCGGCGGGU- -5' |
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12497 | 5' | -65.2 | NC_003324.1 | + | 26797 | 0.66 | 0.22793 |
Target: 5'- -gGCCCGCG-CCC-UGCUgcgucgcaaGCUGUCCGg -3' miRNA: 3'- aaCGGGCGCuGGGuACGG---------CGGCGGGU- -5' |
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12497 | 5' | -65.2 | NC_003324.1 | + | 26687 | 0.66 | 0.22793 |
Target: 5'- gUGCCCGU-ACCUucGUCGCCuauGCCCAa -3' miRNA: 3'- aACGGGCGcUGGGuaCGGCGG---CGGGU- -5' |
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12497 | 5' | -65.2 | NC_003324.1 | + | 10659 | 0.66 | 0.22793 |
Target: 5'- gUUGCCUGC-AUCCGcugcacuguUGCUGuuGCCCGa -3' miRNA: 3'- -AACGGGCGcUGGGU---------ACGGCggCGGGU- -5' |
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12497 | 5' | -65.2 | NC_003324.1 | + | 50491 | 0.66 | 0.231355 |
Target: 5'- -cGCCuUGCGGCaggguucaccgaaCAUGUCGCgGCCCGg -3' miRNA: 3'- aaCGG-GCGCUGg------------GUACGGCGgCGGGU- -5' |
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12497 | 5' | -65.2 | NC_003324.1 | + | 1607 | 0.66 | 0.239516 |
Target: 5'- -aGCgCCGCGcACCacUGCCGCCggauccucgcugGCCCGg -3' miRNA: 3'- aaCG-GGCGC-UGGguACGGCGG------------CGGGU- -5' |
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12497 | 5' | -65.2 | NC_003324.1 | + | 45808 | 0.75 | 0.05427 |
Target: 5'- cUGUCCGaaacacaucCGAUCCGUGCCGUCGCCUg -3' miRNA: 3'- aACGGGC---------GCUGGGUACGGCGGCGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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