miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12506 3' -51.5 NC_003345.1 + 53780 0.66 0.959277
Target:  5'- ---gUugGCCGGGaGGUugugaCCCCg -3'
miRNA:   3'- gaaaAugCGGCCCcUCAuauagGGGG- -5'
12506 3' -51.5 NC_003345.1 + 40886 0.66 0.959277
Target:  5'- ----gACGagaCCGGGG-GUucaaAUCCCCCc -3'
miRNA:   3'- gaaaaUGC---GGCCCCuCAua--UAGGGGG- -5'
12506 3' -51.5 NC_003345.1 + 43410 0.66 0.955265
Target:  5'- ---cUACGUggUGGGGA----AUCCCCCc -3'
miRNA:   3'- gaaaAUGCG--GCCCCUcauaUAGGGGG- -5'
12506 3' -51.5 NC_003345.1 + 24593 0.66 0.946458
Target:  5'- ----gACGCCGGGaGGUcg--CCCUCg -3'
miRNA:   3'- gaaaaUGCGGCCCcUCAuauaGGGGG- -5'
12506 3' -51.5 NC_003345.1 + 32336 0.66 0.936579
Target:  5'- ----gACGaCCGGGGcgaAGg--AUUCCCCg -3'
miRNA:   3'- gaaaaUGC-GGCCCC---UCauaUAGGGGG- -5'
12506 3' -51.5 NC_003345.1 + 1342 0.67 0.92561
Target:  5'- ------aGCgGGGGAGacgg-CCCCCg -3'
miRNA:   3'- gaaaaugCGgCCCCUCauauaGGGGG- -5'
12506 3' -51.5 NC_003345.1 + 67977 0.68 0.90311
Target:  5'- ----aGCGCCGGgcuucuuaauccggcGGAGUGcGUUCUCCa -3'
miRNA:   3'- gaaaaUGCGGCC---------------CCUCAUaUAGGGGG- -5'
12506 3' -51.5 NC_003345.1 + 48476 0.68 0.900393
Target:  5'- ----cAgGUCgGGGGAGagAUGUUCCCCa -3'
miRNA:   3'- gaaaaUgCGG-CCCCUCa-UAUAGGGGG- -5'
12506 3' -51.5 NC_003345.1 + 38878 0.68 0.900393
Target:  5'- aCUUcgGCaGUCGGGGuGaUGUGUUCCUCg -3'
miRNA:   3'- -GAAaaUG-CGGCCCCuC-AUAUAGGGGG- -5'
12506 3' -51.5 NC_003345.1 + 3033 0.68 0.876382
Target:  5'- --cUUACGCuacugaggcccuucCGGGGAGUcgAaCCCCg -3'
miRNA:   3'- gaaAAUGCG--------------GCCCCUCAuaUaGGGGg -5'
12506 3' -51.5 NC_003345.1 + 64310 0.69 0.862124
Target:  5'- ----cGgGCCGGGGugcaugaAGUGaAUCCCCUu -3'
miRNA:   3'- gaaaaUgCGGCCCC-------UCAUaUAGGGGG- -5'
12506 3' -51.5 NC_003345.1 + 75332 0.69 0.837553
Target:  5'- --gUUACGCCGGGGAaccgcacauugGUcgGUCaagaCCUg -3'
miRNA:   3'- gaaAAUGCGGCCCCU-----------CAuaUAGg---GGG- -5'
12506 3' -51.5 NC_003345.1 + 17676 0.69 0.837553
Target:  5'- ---aUACGCC-GGGAGaAUuUCUCCCa -3'
miRNA:   3'- gaaaAUGCGGcCCCUCaUAuAGGGGG- -5'
12506 3' -51.5 NC_003345.1 + 32550 0.71 0.771292
Target:  5'- ----gGCGUCGGGGAagc-GUUCCCCa -3'
miRNA:   3'- gaaaaUGCGGCCCCUcauaUAGGGGG- -5'
12506 3' -51.5 NC_003345.1 + 37716 0.71 0.761171
Target:  5'- ----cACGCCGGGccGAG----UCCCCCg -3'
miRNA:   3'- gaaaaUGCGGCCC--CUCauauAGGGGG- -5'
12506 3' -51.5 NC_003345.1 + 612 0.71 0.730065
Target:  5'- ---aUGgGCCGGGGGaUAUAcUCCCCg -3'
miRNA:   3'- gaaaAUgCGGCCCCUcAUAUaGGGGG- -5'
12506 3' -51.5 NC_003345.1 + 31183 0.75 0.503677
Target:  5'- ---aUACGCCGGGGAcucuccccgGUAU-UCCUCCu -3'
miRNA:   3'- gaaaAUGCGGCCCCU---------CAUAuAGGGGG- -5'
12506 3' -51.5 NC_003345.1 + 722 1.14 0.001978
Target:  5'- cCUUUUACGCCGGGGAGUAUAUCCCCCg -3'
miRNA:   3'- -GAAAAUGCGGCCCCUCAUAUAGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.