miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12507 5' -58.2 NC_003345.1 + 30696 0.67 0.583468
Target:  5'- gAGCcGGGaGUccgacuCGGAACCGaGAGGGAACg -3'
miRNA:   3'- -UUGuCCC-CG------GCCUUGGC-CUCUCUUGa -5'
12507 5' -58.2 NC_003345.1 + 327 0.67 0.541634
Target:  5'- gGGCAGGGGgCGGGG--GGAGAGAcgGCc -3'
miRNA:   3'- -UUGUCCCCgGCCUUggCCUCUCU--UGa -5'
12507 5' -58.2 NC_003345.1 + 77614 0.67 0.541634
Target:  5'- gGGCAGGGGgCGGGG--GGAGAGAcgGCc -3'
miRNA:   3'- -UUGUCCCCgGCCUUggCCUCUCU--UGa -5'
12507 5' -58.2 NC_003345.1 + 12270 0.68 0.531323
Target:  5'- -cCGGuGGGCCGGAGCCGau--GAACg -3'
miRNA:   3'- uuGUC-CCCGGCCUUGGCcucuCUUGa -5'
12507 5' -58.2 NC_003345.1 + 467 0.68 0.521085
Target:  5'- --gGGGGGCCGGAGagaCGGAc-GGACg -3'
miRNA:   3'- uugUCCCCGGCCUUg--GCCUcuCUUGa -5'
12507 5' -58.2 NC_003345.1 + 20327 0.69 0.45188
Target:  5'- cAGCGGcGGCCcc-ACCGGAGGGAGCg -3'
miRNA:   3'- -UUGUCcCCGGccuUGGCCUCUCUUGa -5'
12507 5' -58.2 NC_003345.1 + 23884 0.69 0.423787
Target:  5'- cGACGuGGGGCCGGAcgcuccaCGGAGGGcaAGCa -3'
miRNA:   3'- -UUGU-CCCCGGCCUug-----GCCUCUC--UUGa -5'
12507 5' -58.2 NC_003345.1 + 1104 0.7 0.396765
Target:  5'- -uUAGGGGCCGGGG-CGGAaaacaGGGGGCg -3'
miRNA:   3'- uuGUCCCCGGCCUUgGCCU-----CUCUUGa -5'
12507 5' -58.2 NC_003345.1 + 288 0.72 0.315092
Target:  5'- gGGCAGGGGCCGaccGGCCcGAGAGAcggGCa -3'
miRNA:   3'- -UUGUCCCCGGCc--UUGGcCUCUCU---UGa -5'
12507 5' -58.2 NC_003345.1 + 77575 0.72 0.315092
Target:  5'- gGGCAGGGGCCGaccGGCCcGAGAGAcggGCa -3'
miRNA:   3'- -UUGUCCCCGGCc--UUGGcCUCUCU---UGa -5'
12507 5' -58.2 NC_003345.1 + 835 0.73 0.265883
Target:  5'- cGACcGGGGagaCGGAACCGGGGcGGAAUUg -3'
miRNA:   3'- -UUGuCCCCg--GCCUUGGCCUC-UCUUGA- -5'
12507 5' -58.2 NC_003345.1 + 437 0.75 0.191196
Target:  5'- aGACGGGGaGagacggaCGGAACCGGAGAGAcggACg -3'
miRNA:   3'- -UUGUCCC-Cg------GCCUUGGCCUCUCU---UGa -5'
12507 5' -58.2 NC_003345.1 + 135 0.78 0.118439
Target:  5'- gGACAGGGGaCgGGGGCCGGuuAGAACa -3'
miRNA:   3'- -UUGUCCCC-GgCCUUGGCCucUCUUGa -5'
12507 5' -58.2 NC_003345.1 + 77422 0.78 0.118439
Target:  5'- gGACAGGGGaCgGGGGCCGGuuAGAACa -3'
miRNA:   3'- -UUGUCCCC-GgCCUUGGCCucUCUUGa -5'
12507 5' -58.2 NC_003345.1 + 905 1.05 0.001304
Target:  5'- uAACAGGGGCCGGAACCGGAGAGAACUa -3'
miRNA:   3'- -UUGUCCCCGGCCUUGGCCUCUCUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.