miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12514 3' -57.3 NC_003345.1 + 66030 0.66 0.723383
Target:  5'- -cCCGCuaCGggaaUCCgACCUCCCCGAUg- -3'
miRNA:   3'- gcGGCG--GCaa--AGG-UGGAGGGGCUAac -5'
12514 3' -57.3 NC_003345.1 + 3716 0.66 0.713152
Target:  5'- gGCCGCUccg-CgACCUUCCCGAa-- -3'
miRNA:   3'- gCGGCGGcaaaGgUGGAGGGGCUaac -5'
12514 3' -57.3 NC_003345.1 + 14421 0.66 0.702848
Target:  5'- gGCCGUCG--UCCACUU-CCCGAa-- -3'
miRNA:   3'- gCGGCGGCaaAGGUGGAgGGGCUaac -5'
12514 3' -57.3 NC_003345.1 + 37800 0.66 0.698708
Target:  5'- uGCCGCCGUcaugCCACacccaaugucgcCCCCGAc-- -3'
miRNA:   3'- gCGGCGGCAaa--GGUGga----------GGGGCUaac -5'
12514 3' -57.3 NC_003345.1 + 20027 0.67 0.682059
Target:  5'- gGCUGacuUGgagUUCgACCUCCCCGAUg- -3'
miRNA:   3'- gCGGCg--GCa--AAGgUGGAGGGGCUAac -5'
12514 3' -57.3 NC_003345.1 + 30874 0.68 0.597896
Target:  5'- -aUCGCC-UUUCCACacaUCCCCGaAUUGa -3'
miRNA:   3'- gcGGCGGcAAAGGUGg--AGGGGC-UAAC- -5'
12514 3' -57.3 NC_003345.1 + 73425 0.69 0.505328
Target:  5'- cCGCCGCCGggUUCUGCCgaCUCGAUg- -3'
miRNA:   3'- -GCGGCGGCa-AAGGUGGagGGGCUAac -5'
12514 3' -57.3 NC_003345.1 + 16822 0.71 0.401597
Target:  5'- gGCgGUCGUg-CCACgUUCCCCGAUUGu -3'
miRNA:   3'- gCGgCGGCAaaGGUG-GAGGGGCUAAC- -5'
12514 3' -57.3 NC_003345.1 + 50690 0.72 0.367362
Target:  5'- -cCCGCCGUUUCCACCgCCgCCGu--- -3'
miRNA:   3'- gcGGCGGCAAAGGUGGaGG-GGCuaac -5'
12514 3' -57.3 NC_003345.1 + 936 0.72 0.351014
Target:  5'- cCGCC-CCGgUUCCGUCUCCCCGGUc- -3'
miRNA:   3'- -GCGGcGGCaAAGGUGGAGGGGCUAac -5'
12514 3' -57.3 NC_003345.1 + 9098 1.09 0.001144
Target:  5'- gCGCCGCCGUUUCCACCUCCCCGAUUGa -3'
miRNA:   3'- -GCGGCGGCAAAGGUGGAGGGGCUAAC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.