miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12514 5' -55.1 NC_003345.1 + 451 0.66 0.849623
Target:  5'- --gGACGGACGGGGa-GAgaCGGGGa -3'
miRNA:   3'- aagCUGCCUGCCCUacCUaaGCUCCc -5'
12514 5' -55.1 NC_003345.1 + 19671 0.67 0.78708
Target:  5'- cUCGACGGGCGuGGGUaGGGUcaaggCGuGGu -3'
miRNA:   3'- aAGCUGCCUGC-CCUA-CCUAa----GCuCCc -5'
12514 5' -55.1 NC_003345.1 + 58869 0.67 0.767707
Target:  5'- uUUCGccucaGGGCGGGAUGGAgugcuacgUGaAGGGu -3'
miRNA:   3'- -AAGCug---CCUGCCCUACCUaa------GC-UCCC- -5'
12514 5' -55.1 NC_003345.1 + 77537 0.68 0.747811
Target:  5'- --aGACGGACGGGcaGGGggCaGGGGa -3'
miRNA:   3'- aagCUGCCUGCCCuaCCUaaGcUCCC- -5'
12514 5' -55.1 NC_003345.1 + 250 0.68 0.747811
Target:  5'- --aGACGGACGGGcaGGGggCaGGGGa -3'
miRNA:   3'- aagCUGCCUGCCCuaCCUaaGcUCCC- -5'
12514 5' -55.1 NC_003345.1 + 42321 0.68 0.737693
Target:  5'- gUUGGCGGcgACGGGGUaGGcaUCGAGGc -3'
miRNA:   3'- aAGCUGCC--UGCCCUA-CCuaAGCUCCc -5'
12514 5' -55.1 NC_003345.1 + 55523 0.68 0.696327
Target:  5'- -aCGGCGGugGGGGUaa---CGGGGGa -3'
miRNA:   3'- aaGCUGCCugCCCUAccuaaGCUCCC- -5'
12514 5' -55.1 NC_003345.1 + 50360 0.7 0.615676
Target:  5'- -cCGGCGGugGuGGcgGUGGAggugcuggcggcuccUUCGGGGGu -3'
miRNA:   3'- aaGCUGCCugC-CC--UACCU---------------AAGCUCCC- -5'
12514 5' -55.1 NC_003345.1 + 53797 0.7 0.600786
Target:  5'- --aGACGaAgGGGAUGGAUUCGAcccucguggcGGGg -3'
miRNA:   3'- aagCUGCcUgCCCUACCUAAGCU----------CCC- -5'
12514 5' -55.1 NC_003345.1 + 77624 0.7 0.59018
Target:  5'- -cCGuAUGGACGGGcaGGGggCGGGGGg -3'
miRNA:   3'- aaGC-UGCCUGCCCuaCCUaaGCUCCC- -5'
12514 5' -55.1 NC_003345.1 + 337 0.7 0.59018
Target:  5'- -cCGuAUGGACGGGcaGGGggCGGGGGg -3'
miRNA:   3'- aaGC-UGCCUGCCCuaCCUaaGCUCCC- -5'
12514 5' -55.1 NC_003345.1 + 60543 0.7 0.59018
Target:  5'- -cCGugGGGCGGuGUGuccucggauagaGAUUCGGGGGu -3'
miRNA:   3'- aaGCugCCUGCCcUAC------------CUAAGCUCCC- -5'
12514 5' -55.1 NC_003345.1 + 7362 0.72 0.507124
Target:  5'- -gUGGCGGuguaaagacuGCGGGAgccGGGUUCGAGGu -3'
miRNA:   3'- aaGCUGCC----------UGCCCUa--CCUAAGCUCCc -5'
12514 5' -55.1 NC_003345.1 + 67669 0.72 0.467452
Target:  5'- cUCGGgGGAauaggaacaCGGGGUGGucgcgcuUUCGAGGGc -3'
miRNA:   3'- aAGCUgCCU---------GCCCUACCu------AAGCUCCC- -5'
12514 5' -55.1 NC_003345.1 + 9064 1.07 0.002487
Target:  5'- cUUCGACGGACGGGAUGGAUUCGAGGGc -3'
miRNA:   3'- -AAGCUGCCUGCCCUACCUAAGCUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.