miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12515 5' -56 NC_003345.1 + 71917 0.66 0.728055
Target:  5'- --aUCCCGAGuCCCGUgacgaUUCUGUUCUg -3'
miRNA:   3'- augAGGGCUUcGGGCA-----GAGACAAGGa -5'
12515 5' -56 NC_003345.1 + 36055 0.66 0.738391
Target:  5'- -gUUCCCGAGGUcgaaCCGUCUCggaaUGUUCg- -3'
miRNA:   3'- auGAGGGCUUCG----GGCAGAG----ACAAGga -5'
12515 5' -56 NC_003345.1 + 6574 0.66 0.768739
Target:  5'- -cCUCUCGGAGUUCGUCgaugcGUUCCUc -3'
miRNA:   3'- auGAGGGCUUCGGGCAGaga--CAAGGA- -5'
12515 5' -56 NC_003345.1 + 309 0.67 0.675208
Target:  5'- gUACggCCCGuuucccGUCCGUCUCUccgGUUCCg -3'
miRNA:   3'- -AUGa-GGGCuu----CGGGCAGAGA---CAAGGa -5'
12515 5' -56 NC_003345.1 + 46587 0.67 0.707117
Target:  5'- gACUCCuCGAaguugaacaGGCCCGgCUCaccGUUCCg -3'
miRNA:   3'- aUGAGG-GCU---------UCGGGCaGAGa--CAAGGa -5'
12515 5' -56 NC_003345.1 + 12199 0.68 0.621375
Target:  5'- aUGCUCCgGggGUUCGUCUCgaaucgCCUc -3'
miRNA:   3'- -AUGAGGgCuuCGGGCAGAGacaa--GGA- -5'
12515 5' -56 NC_003345.1 + 173 0.69 0.546601
Target:  5'- -uCUCCCcu-GCCCGUCUCUcGggCCg -3'
miRNA:   3'- auGAGGGcuuCGGGCAGAGA-CaaGGa -5'
12515 5' -56 NC_003345.1 + 77460 0.69 0.546601
Target:  5'- -uCUCCCcu-GCCCGUCUCUcGggCCg -3'
miRNA:   3'- auGAGGGcuuCGGGCAGAGA-CaaGGa -5'
12515 5' -56 NC_003345.1 + 25383 0.7 0.484889
Target:  5'- gUACUCCCGAgucucauucuGGUUCGUCgggUGUUCCUu -3'
miRNA:   3'- -AUGAGGGCU----------UCGGGCAGag-ACAAGGA- -5'
12515 5' -56 NC_003345.1 + 61807 0.75 0.27977
Target:  5'- aACUCUCGGAGUCCGUCUCgGggUCUu -3'
miRNA:   3'- aUGAGGGCUUCGGGCAGAGaCaaGGA- -5'
12515 5' -56 NC_003345.1 + 10518 1.05 0.002115
Target:  5'- gUACUCCCGAAGCCCGUCUCUGUUCCUc -3'
miRNA:   3'- -AUGAGGGCUUCGGGCAGAGACAAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.