Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12516 | 5' | -52.6 | NC_003345.1 | + | 36653 | 0.66 | 0.886711 |
Target: 5'- uGAugUUGauucCCACGUCCACCGuGGg--- -3' miRNA: 3'- -CUugAACa---GGUGCAGGUGGC-CUgauu -5' |
|||||||
12516 | 5' | -52.6 | NC_003345.1 | + | 14757 | 0.67 | 0.837728 |
Target: 5'- cGACacGcUCCACGUCgCACCGGAaCUGu -3' miRNA: 3'- cUUGaaC-AGGUGCAG-GUGGCCU-GAUu -5' |
|||||||
12516 | 5' | -52.6 | NC_003345.1 | + | 24374 | 0.69 | 0.760657 |
Target: 5'- cGAACcgUUGgCUACGUCCACCGG-CUc- -3' miRNA: 3'- -CUUG--AACaGGUGCAGGUGGCCuGAuu -5' |
|||||||
12516 | 5' | -52.6 | NC_003345.1 | + | 11475 | 1.06 | 0.004191 |
Target: 5'- gGAACUUGUCCACGUCCACCGGACUAAu -3' miRNA: 3'- -CUUGAACAGGUGCAGGUGGCCUGAUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home