Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12518 | 3' | -52.5 | NC_003345.1 | + | 12768 | 1.09 | 0.002564 |
Target: 5'- aACGCCGUCACCAACUCGGCAGAAAACu -3' miRNA: 3'- -UGCGGCAGUGGUUGAGCCGUCUUUUG- -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 23242 | 0.77 | 0.357778 |
Target: 5'- uCGCCGUCuCC-GCUCGGUcggGGAGAGCg -3' miRNA: 3'- uGCGGCAGuGGuUGAGCCG---UCUUUUG- -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 21637 | 0.71 | 0.640887 |
Target: 5'- uCGCCGguaucacuaUCGCCAACUCgGGCGGc-GACg -3' miRNA: 3'- uGCGGC---------AGUGGUUGAG-CCGUCuuUUG- -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 60183 | 0.71 | 0.684763 |
Target: 5'- aACGCCG-CACCAGCacCGGCcauAGcGAGCa -3' miRNA: 3'- -UGCGGCaGUGGUUGa-GCCG---UCuUUUG- -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 25409 | 0.71 | 0.684763 |
Target: 5'- aGCGCCGUCccgcucuCCGAgggCGGCgaAGAAGACg -3' miRNA: 3'- -UGCGGCAGu------GGUUga-GCCG--UCUUUUG- -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 45285 | 0.7 | 0.706442 |
Target: 5'- --aCCGUCACCAcACUCcgGGCAGGuGAGCg -3' miRNA: 3'- ugcGGCAGUGGU-UGAG--CCGUCU-UUUG- -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 23186 | 0.69 | 0.759163 |
Target: 5'- aGCGCC---ACCGAC-CGGCAGAAGu- -3' miRNA: 3'- -UGCGGcagUGGUUGaGCCGUCUUUug -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 14938 | 0.69 | 0.769363 |
Target: 5'- aACGuauCCGUCACCGuacucgUUCGGCGGGucGCa -3' miRNA: 3'- -UGC---GGCAGUGGUu-----GAGCCGUCUuuUG- -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 43581 | 0.69 | 0.778422 |
Target: 5'- uACGCCcaaucaguucaugGUCACgGACUaCGGCgAGggGAUa -3' miRNA: 3'- -UGCGG-------------CAGUGgUUGA-GCCG-UCuuUUG- -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 31139 | 0.68 | 0.83529 |
Target: 5'- aACGCCGUCagccuccGCUGACggugCGGCAcGAAAu- -3' miRNA: 3'- -UGCGGCAG-------UGGUUGa---GCCGU-CUUUug -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 58495 | 0.68 | 0.836179 |
Target: 5'- cCGCCcUCGuCCuguuguaaucaAGCUCGGCGGAGAGg -3' miRNA: 3'- uGCGGcAGU-GG-----------UUGAGCCGUCUUUUg -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 26306 | 0.68 | 0.844944 |
Target: 5'- aACGUCGUagaGCCAcgUCaGCGGGAGACu -3' miRNA: 3'- -UGCGGCAg--UGGUugAGcCGUCUUUUG- -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 17945 | 0.67 | 0.853485 |
Target: 5'- aAUGCCGUcCACggaaGAC-CGGCgAGAAGGCu -3' miRNA: 3'- -UGCGGCA-GUGg---UUGaGCCG-UCUUUUG- -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 73542 | 0.67 | 0.853485 |
Target: 5'- -gGCCGguaucacucCAUCGAgUCGGCAGAAcccGGCg -3' miRNA: 3'- ugCGGCa--------GUGGUUgAGCCGUCUU---UUG- -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 58813 | 0.67 | 0.853485 |
Target: 5'- aACGCCGUCGuguuCCGcaagcgucugaACgCGGCGGAGAu- -3' miRNA: 3'- -UGCGGCAGU----GGU-----------UGaGCCGUCUUUug -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 67944 | 0.67 | 0.877683 |
Target: 5'- -gGCUaUCgACCGACUCGgGCAGGAGGu -3' miRNA: 3'- ugCGGcAG-UGGUUGAGC-CGUCUUUUg -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 51140 | 0.67 | 0.885251 |
Target: 5'- -gGUCGUCACCGACUUGGacgcucGCg -3' miRNA: 3'- ugCGGCAGUGGUUGAGCCgucuuuUG- -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 33431 | 0.67 | 0.885251 |
Target: 5'- cACGCCGUCguaAUCGAgUCGGaAGuAAACg -3' miRNA: 3'- -UGCGGCAG---UGGUUgAGCCgUCuUUUG- -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 11981 | 0.67 | 0.885251 |
Target: 5'- -gGuuGUCACCGAgguaUgGGUAGGGAACc -3' miRNA: 3'- ugCggCAGUGGUUg---AgCCGUCUUUUG- -5' |
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12518 | 3' | -52.5 | NC_003345.1 | + | 75290 | 0.67 | 0.885251 |
Target: 5'- cCGCC-UCACCAGCagGGCuGAAc-- -3' miRNA: 3'- uGCGGcAGUGGUUGagCCGuCUUuug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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