miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12521 5' -55.3 NC_003345.1 + 43717 0.66 0.811904
Target:  5'- cGAAGCAgGACACGacguaUCCccuCGcCGUAg -3'
miRNA:   3'- uCUUCGUgCUGUGCg----AGGu--GCaGCGU- -5'
12521 5' -55.3 NC_003345.1 + 14602 0.66 0.773782
Target:  5'- uGGGAGCGgucUGGaGCGUUCCACGgCGCu -3'
miRNA:   3'- -UCUUCGU---GCUgUGCGAGGUGCaGCGu -5'
12521 5' -55.3 NC_003345.1 + 23889 0.67 0.743686
Target:  5'- uGggGC-CGG-ACGCUCCACGgaggGCAa -3'
miRNA:   3'- uCuuCGuGCUgUGCGAGGUGCag--CGU- -5'
12521 5' -55.3 NC_003345.1 + 28594 0.67 0.753841
Target:  5'- uAGAAGC-CGAgGCGCUgaaccUCugGUUGCc -3'
miRNA:   3'- -UCUUCGuGCUgUGCGA-----GGugCAGCGu -5'
12521 5' -55.3 NC_003345.1 + 33224 0.67 0.753841
Target:  5'- cGAAGguUGACcCGCUCUACGUgGa- -3'
miRNA:   3'- uCUUCguGCUGuGCGAGGUGCAgCgu -5'
12521 5' -55.3 NC_003345.1 + 47548 0.67 0.712619
Target:  5'- aGGggGCugACGACcUGUUCCGacgaGUCGCu -3'
miRNA:   3'- -UCuuCG--UGCUGuGCGAGGUg---CAGCGu -5'
12521 5' -55.3 NC_003345.1 + 69767 0.67 0.743686
Target:  5'- aGGAcguGCGCGAC-CGCUCguaCugGUCgGCAa -3'
miRNA:   3'- -UCUu--CGUGCUGuGCGAG---GugCAG-CGU- -5'
12521 5' -55.3 NC_003345.1 + 24906 0.69 0.616436
Target:  5'- cGAGGgaACGACGCGCUCuCugGUUGa- -3'
miRNA:   3'- uCUUCg-UGCUGUGCGAG-GugCAGCgu -5'
12521 5' -55.3 NC_003345.1 + 76789 0.74 0.360963
Target:  5'- gGGAGcGCACGACACGCgagggCCGgGuUCGCu -3'
miRNA:   3'- -UCUU-CGUGCUGUGCGa----GGUgC-AGCGu -5'
12521 5' -55.3 NC_003345.1 + 14765 1.08 0.001673
Target:  5'- gAGAAGCACGACACGCUCCACGUCGCAc -3'
miRNA:   3'- -UCUUCGUGCUGUGCGAGGUGCAGCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.