miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12524 5' -50 NC_003345.1 + 16580 1.05 0.008397
Target:  5'- gGAGGUCGGAAUGAGCGAGUUUACGAUu -3'
miRNA:   3'- -CUCCAGCCUUACUCGCUCAAAUGCUA- -5'
12524 5' -50 NC_003345.1 + 47109 0.7 0.86043
Target:  5'- -uGGUCGGuucaucGUGgcgaagcgaaacgagGGCGAGUUUGCGAa -3'
miRNA:   3'- cuCCAGCCu-----UAC---------------UCGCUCAAAUGCUa -5'
12524 5' -50 NC_003345.1 + 23228 0.7 0.865426
Target:  5'- -cGGUCGGGGaGAGCGGGcgucaUGCGGUc -3'
miRNA:   3'- cuCCAGCCUUaCUCGCUCaa---AUGCUA- -5'
12524 5' -50 NC_003345.1 + 70775 0.69 0.889004
Target:  5'- -cGGUCGGAGUGAcCGAGcauaUACGGc -3'
miRNA:   3'- cuCCAGCCUUACUcGCUCaa--AUGCUa -5'
12524 5' -50 NC_003345.1 + 13041 0.69 0.896325
Target:  5'- uAGGUCGGGAagGGGUGAGUcgGCa-- -3'
miRNA:   3'- cUCCAGCCUUa-CUCGCUCAaaUGcua -5'
12524 5' -50 NC_003345.1 + 3373 0.66 0.975184
Target:  5'- gGAGGgaaccggCGGAGaGAGCGgcGGaUUGCGAUg -3'
miRNA:   3'- -CUCCa------GCCUUaCUCGC--UCaAAUGCUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.