miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12525 5' -53.4 NC_003345.1 + 3200 0.66 0.853943
Target:  5'- -gCCGGAGGAAuacGAAGGCuCCGGccuuacugacgaGGAAa -3'
miRNA:   3'- aaGGUCUUCUU---CUUCCG-GGCC------------UCUUa -5'
12525 5' -53.4 NC_003345.1 + 22837 0.66 0.827331
Target:  5'- cUUCCGaggagcugacGAAGGAGGucaacgagcggcAGGCCCGGcAGGAa -3'
miRNA:   3'- -AAGGU----------CUUCUUCU------------UCCGGGCC-UCUUa -5'
12525 5' -53.4 NC_003345.1 + 45150 0.66 0.818025
Target:  5'- -aCgAGGAGAGGGAGGUCgUGGAcGAAUa -3'
miRNA:   3'- aaGgUCUUCUUCUUCCGG-GCCU-CUUA- -5'
12525 5' -53.4 NC_003345.1 + 48888 0.66 0.818025
Target:  5'- cUCCAGAAGcGGuAGGUCgGGuGAAg -3'
miRNA:   3'- aAGGUCUUCuUCuUCCGGgCCuCUUa -5'
12525 5' -53.4 NC_003345.1 + 47035 0.66 0.818025
Target:  5'- aUCCGGGu--GGucGGCgCGGAGAAUa -3'
miRNA:   3'- aAGGUCUucuUCuuCCGgGCCUCUUA- -5'
12525 5' -53.4 NC_003345.1 + 1110 0.67 0.798822
Target:  5'- -gCCGGGgcggaaaacAGggGgcGGCCCGGcGAAa -3'
miRNA:   3'- aaGGUCU---------UCuuCuuCCGGGCCuCUUa -5'
12525 5' -53.4 NC_003345.1 + 488 0.67 0.768701
Target:  5'- -aCCGGAuuaugggauaGGGuAGggGGgCCGGAGAGa -3'
miRNA:   3'- aaGGUCU----------UCU-UCuuCCgGGCCUCUUa -5'
12525 5' -53.4 NC_003345.1 + 31064 0.68 0.737279
Target:  5'- -cCCuGAguGGAAGGAGGaauaCCGGGGAGa -3'
miRNA:   3'- aaGGuCU--UCUUCUUCCg---GGCCUCUUa -5'
12525 5' -53.4 NC_003345.1 + 22505 0.68 0.715767
Target:  5'- -aCCAcGAGAGGAAcacGGUCUGGAGggUg -3'
miRNA:   3'- aaGGUcUUCUUCUU---CCGGGCCUCuuA- -5'
12525 5' -53.4 NC_003345.1 + 47494 0.71 0.528115
Target:  5'- uUUUCGGAAGuAGcGGGCCgGGAGGAUu -3'
miRNA:   3'- -AAGGUCUUCuUCuUCCGGgCCUCUUA- -5'
12525 5' -53.4 NC_003345.1 + 72699 0.74 0.370093
Target:  5'- -cUCAGAAGAAcGAGGgCCGGAGAAUc -3'
miRNA:   3'- aaGGUCUUCUUcUUCCgGGCCUCUUA- -5'
12525 5' -53.4 NC_003345.1 + 16815 0.92 0.026324
Target:  5'- cUUCCAGAAGAAGAAGGCCCGGAa--- -3'
miRNA:   3'- -AAGGUCUUCUUCUUCCGGGCCUcuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.