Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12526 | 5' | -54.3 | NC_003345.1 | + | 41653 | 0.69 | 0.716717 |
Target: 5'- aCGGUGaGgaGuucagGCUCUACAAgCGGGa -3' miRNA: 3'- gGCCGC-CgaCua---CGAGAUGUUaGCCC- -5' |
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12526 | 5' | -54.3 | NC_003345.1 | + | 28520 | 0.67 | 0.832762 |
Target: 5'- gCGGUGGgaGuugGCUCUugAcgCGGc -3' miRNA: 3'- gGCCGCCgaCua-CGAGAugUuaGCCc -5' |
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12526 | 5' | -54.3 | NC_003345.1 | + | 22490 | 0.66 | 0.865885 |
Target: 5'- --cGCGGCUGAcuaCUgUACGAUgGGGg -3' miRNA: 3'- ggcCGCCGACUac-GAgAUGUUAgCCC- -5' |
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12526 | 5' | -54.3 | NC_003345.1 | + | 52774 | 0.74 | 0.456343 |
Target: 5'- aUGGCGGCuaUGAUGCUCUugAcUCcgaGGGc -3' miRNA: 3'- gGCCGCCG--ACUACGAGAugUuAG---CCC- -5' |
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12526 | 5' | -54.3 | NC_003345.1 | + | 69570 | 0.71 | 0.620125 |
Target: 5'- gCGGCGGCgUGAcgcagacUGCUCccucgGCG-UCGGGu -3' miRNA: 3'- gGCCGCCG-ACU-------ACGAGa----UGUuAGCCC- -5' |
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12526 | 5' | -54.3 | NC_003345.1 | + | 74391 | 0.7 | 0.663966 |
Target: 5'- gUCGGCGGaUUGGUGUUucCUACAuaAUCGGu -3' miRNA: 3'- -GGCCGCC-GACUACGA--GAUGU--UAGCCc -5' |
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12526 | 5' | -54.3 | NC_003345.1 | + | 42826 | 0.69 | 0.716717 |
Target: 5'- -aGGuCGGUgaGGUGUUCUuccCAAUCGGGg -3' miRNA: 3'- ggCC-GCCGa-CUACGAGAu--GUUAGCCC- -5' |
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12526 | 5' | -54.3 | NC_003345.1 | + | 22817 | 0.69 | 0.716717 |
Target: 5'- uCCGGCGGCUucaGCUCgaACGAcUCGGu -3' miRNA: 3'- -GGCCGCCGAcuaCGAGa-UGUU-AGCCc -5' |
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12526 | 5' | -54.3 | NC_003345.1 | + | 73505 | 0.69 | 0.737336 |
Target: 5'- gCGGUGGCUGA-GCgaaucucucaggUCUACAA-CGGa -3' miRNA: 3'- gGCCGCCGACUaCG------------AGAUGUUaGCCc -5' |
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12526 | 5' | -54.3 | NC_003345.1 | + | 50361 | 0.67 | 0.803944 |
Target: 5'- cCCGGCGGUgguggcgguggaGGUGCUg-GCGGcuccuUCGGGg -3' miRNA: 3'- -GGCCGCCGa-----------CUACGAgaUGUU-----AGCCC- -5' |
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12526 | 5' | -54.3 | NC_003345.1 | + | 14240 | 0.67 | 0.814972 |
Target: 5'- aCCGGgGGUUGuccAUGaacgUCgugucGCAAUCGGGg -3' miRNA: 3'- -GGCCgCCGAC---UACg---AGa----UGUUAGCCC- -5' |
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12526 | 5' | -54.3 | NC_003345.1 | + | 16942 | 1.13 | 0.00117 |
Target: 5'- uCCGGCGGCUGAUGCUCUACAAUCGGGg -3' miRNA: 3'- -GGCCGCCGACUACGAGAUGUUAGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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