miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12527 3' -60.2 NC_003345.1 + 8391 0.66 0.590426
Target:  5'- aCCGCCGGUUguaggagaacaCCUua-CC-UCCCACCGa -3'
miRNA:   3'- -GGUGGCCGA-----------GGGuacGGuAGGGUGGC- -5'
12527 3' -60.2 NC_003345.1 + 10883 0.66 0.58017
Target:  5'- gCCGCUGGCUCCacagAUGUaGUCCUGUCGg -3'
miRNA:   3'- -GGUGGCCGAGGg---UACGgUAGGGUGGC- -5'
12527 3' -60.2 NC_003345.1 + 77324 0.66 0.549655
Target:  5'- -aACCGGCcCCCGUcCCcuGUCCC-CCGu -3'
miRNA:   3'- ggUGGCCGaGGGUAcGG--UAGGGuGGC- -5'
12527 3' -60.2 NC_003345.1 + 37 0.66 0.549655
Target:  5'- -aACCGGCcCCCGUcCCcuGUCCC-CCGu -3'
miRNA:   3'- ggUGGCCGaGGGUAcGG--UAGGGuGGC- -5'
12527 3' -60.2 NC_003345.1 + 8038 0.67 0.529588
Target:  5'- uUACCGaGUcauUCgCCGcgccGCCAUCCCACCa -3'
miRNA:   3'- gGUGGC-CG---AG-GGUa---CGGUAGGGUGGc -5'
12527 3' -60.2 NC_003345.1 + 55151 0.67 0.529588
Target:  5'- cCCACCGGCUUguaCGaGCUauucGUCCCACg- -3'
miRNA:   3'- -GGUGGCCGAGg--GUaCGG----UAGGGUGgc -5'
12527 3' -60.2 NC_003345.1 + 9613 0.67 0.528592
Target:  5'- gUACCGGaCUCCCuUGCCGUggagaggCCCuuCGa -3'
miRNA:   3'- gGUGGCC-GAGGGuACGGUA-------GGGugGC- -5'
12527 3' -60.2 NC_003345.1 + 63320 0.67 0.500017
Target:  5'- cUCACCGGCcCCUcgGCCAgcgugCCCGu-- -3'
miRNA:   3'- -GGUGGCCGaGGGuaCGGUa----GGGUggc -5'
12527 3' -60.2 NC_003345.1 + 33775 0.67 0.500017
Target:  5'- gUCGgCGGCUUCgAgGCC-UCCCGCUGg -3'
miRNA:   3'- -GGUgGCCGAGGgUaCGGuAGGGUGGC- -5'
12527 3' -60.2 NC_003345.1 + 33068 0.67 0.480713
Target:  5'- aCGCCGGg-CCgAccGCCAaCCCGCCGg -3'
miRNA:   3'- gGUGGCCgaGGgUa-CGGUaGGGUGGC- -5'
12527 3' -60.2 NC_003345.1 + 50678 0.69 0.416255
Target:  5'- cCCGCCaGCgUCCCc-GCCGUuUCCACCGc -3'
miRNA:   3'- -GGUGGcCG-AGGGuaCGGUA-GGGUGGC- -5'
12527 3' -60.2 NC_003345.1 + 35191 0.69 0.372759
Target:  5'- gCGUCGGCUCCCGUGaaGUCCUcggcgggGCCGu -3'
miRNA:   3'- gGUGGCCGAGGGUACggUAGGG-------UGGC- -5'
12527 3' -60.2 NC_003345.1 + 63143 0.79 0.094918
Target:  5'- uCCACCGaGUcgCCCGUGCUA-CCCACCGu -3'
miRNA:   3'- -GGUGGC-CGa-GGGUACGGUaGGGUGGC- -5'
12527 3' -60.2 NC_003345.1 + 18788 1.1 0.000492
Target:  5'- uCCACCGGCUCCCAUGCCAUCCCACCGa -3'
miRNA:   3'- -GGUGGCCGAGGGUACGGUAGGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.