Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12527 | 3' | -60.2 | NC_003345.1 | + | 10883 | 0.66 | 0.58017 |
Target: 5'- gCCGCUGGCUCCacagAUGUaGUCCUGUCGg -3' miRNA: 3'- -GGUGGCCGAGGg---UACGgUAGGGUGGC- -5' |
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12527 | 3' | -60.2 | NC_003345.1 | + | 8391 | 0.66 | 0.590426 |
Target: 5'- aCCGCCGGUUguaggagaacaCCUua-CC-UCCCACCGa -3' miRNA: 3'- -GGUGGCCGA-----------GGGuacGGuAGGGUGGC- -5' |
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12527 | 3' | -60.2 | NC_003345.1 | + | 77324 | 0.66 | 0.549655 |
Target: 5'- -aACCGGCcCCCGUcCCcuGUCCC-CCGu -3' miRNA: 3'- ggUGGCCGaGGGUAcGG--UAGGGuGGC- -5' |
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12527 | 3' | -60.2 | NC_003345.1 | + | 37 | 0.66 | 0.549655 |
Target: 5'- -aACCGGCcCCCGUcCCcuGUCCC-CCGu -3' miRNA: 3'- ggUGGCCGaGGGUAcGG--UAGGGuGGC- -5' |
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12527 | 3' | -60.2 | NC_003345.1 | + | 63320 | 0.67 | 0.500017 |
Target: 5'- cUCACCGGCcCCUcgGCCAgcgugCCCGu-- -3' miRNA: 3'- -GGUGGCCGaGGGuaCGGUa----GGGUggc -5' |
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12527 | 3' | -60.2 | NC_003345.1 | + | 33068 | 0.67 | 0.480713 |
Target: 5'- aCGCCGGg-CCgAccGCCAaCCCGCCGg -3' miRNA: 3'- gGUGGCCgaGGgUa-CGGUaGGGUGGC- -5' |
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12527 | 3' | -60.2 | NC_003345.1 | + | 33775 | 0.67 | 0.500017 |
Target: 5'- gUCGgCGGCUUCgAgGCC-UCCCGCUGg -3' miRNA: 3'- -GGUgGCCGAGGgUaCGGuAGGGUGGC- -5' |
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12527 | 3' | -60.2 | NC_003345.1 | + | 9613 | 0.67 | 0.528592 |
Target: 5'- gUACCGGaCUCCCuUGCCGUggagaggCCCuuCGa -3' miRNA: 3'- gGUGGCC-GAGGGuACGGUA-------GGGugGC- -5' |
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12527 | 3' | -60.2 | NC_003345.1 | + | 8038 | 0.67 | 0.529588 |
Target: 5'- uUACCGaGUcauUCgCCGcgccGCCAUCCCACCa -3' miRNA: 3'- gGUGGC-CG---AG-GGUa---CGGUAGGGUGGc -5' |
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12527 | 3' | -60.2 | NC_003345.1 | + | 55151 | 0.67 | 0.529588 |
Target: 5'- cCCACCGGCUUguaCGaGCUauucGUCCCACg- -3' miRNA: 3'- -GGUGGCCGAGg--GUaCGG----UAGGGUGgc -5' |
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12527 | 3' | -60.2 | NC_003345.1 | + | 35191 | 0.69 | 0.372759 |
Target: 5'- gCGUCGGCUCCCGUGaaGUCCUcggcgggGCCGu -3' miRNA: 3'- gGUGGCCGAGGGUACggUAGGG-------UGGC- -5' |
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12527 | 3' | -60.2 | NC_003345.1 | + | 50678 | 0.69 | 0.416255 |
Target: 5'- cCCGCCaGCgUCCCc-GCCGUuUCCACCGc -3' miRNA: 3'- -GGUGGcCG-AGGGuaCGGUA-GGGUGGC- -5' |
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12527 | 3' | -60.2 | NC_003345.1 | + | 63143 | 0.79 | 0.094918 |
Target: 5'- uCCACCGaGUcgCCCGUGCUA-CCCACCGu -3' miRNA: 3'- -GGUGGC-CGa-GGGUACGGUaGGGUGGC- -5' |
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12527 | 3' | -60.2 | NC_003345.1 | + | 18788 | 1.1 | 0.000492 |
Target: 5'- uCCACCGGCUCCCAUGCCAUCCCACCGa -3' miRNA: 3'- -GGUGGCCGAGGGUACGGUAGGGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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