miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12528 5' -57.9 NC_003345.1 + 66495 0.66 0.714068
Target:  5'- uGGCCGGauugaGGGAAUCGAggaaGCaaacgagaACGUCg -3'
miRNA:   3'- gCUGGCCg----CCCUUAGCU----UGg-------UGCGGa -5'
12528 5' -57.9 NC_003345.1 + 10200 0.66 0.683251
Target:  5'- uGGCguCGGCGuGGAaaGUCGAaGCCcCGCCg -3'
miRNA:   3'- gCUG--GCCGC-CCU--UAGCU-UGGuGCGGa -5'
12528 5' -57.9 NC_003345.1 + 53780 0.67 0.641587
Target:  5'- uCGACCcucguGGCGGGggU-GAACgGCGUUUc -3'
miRNA:   3'- -GCUGG-----CCGCCCuuAgCUUGgUGCGGA- -5'
12528 5' -57.9 NC_003345.1 + 35171 0.68 0.589388
Target:  5'- --cUCGGCGGGGccGUCguacuguccgaGAACCACGUCUu -3'
miRNA:   3'- gcuGGCCGCCCU--UAG-----------CUUGGUGCGGA- -5'
12528 5' -57.9 NC_003345.1 + 74557 0.68 0.568681
Target:  5'- aGACaGGCcGGAGUCGAACCgGCGUa- -3'
miRNA:   3'- gCUGgCCGcCCUUAGCUUGG-UGCGga -5'
12528 5' -57.9 NC_003345.1 + 54050 0.7 0.468907
Target:  5'- aCGACCGGCGGcGA---GAACCGCGa-- -3'
miRNA:   3'- -GCUGGCCGCC-CUuagCUUGGUGCgga -5'
12528 5' -57.9 NC_003345.1 + 26709 0.71 0.422452
Target:  5'- aCGACCcgaaGGCGGcGggUCGAGuuGaCGCCa -3'
miRNA:   3'- -GCUGG----CCGCC-CuuAGCUUggU-GCGGa -5'
12528 5' -57.9 NC_003345.1 + 18768 0.71 0.413497
Target:  5'- aGcCCGGUGcGAAUUGGAUUACGCCUg -3'
miRNA:   3'- gCuGGCCGCcCUUAGCUUGGUGCGGA- -5'
12528 5' -57.9 NC_003345.1 + 10314 0.72 0.338416
Target:  5'- aCGuCgCGGCGGGGcuUCGAcuuuCCACGCCg -3'
miRNA:   3'- -GCuG-GCCGCCCUu-AGCUu---GGUGCGGa -5'
12528 5' -57.9 NC_003345.1 + 21525 0.74 0.273746
Target:  5'- uGACCGGCGGGAGUgaUGAcCUugGCg- -3'
miRNA:   3'- gCUGGCCGCCCUUA--GCUuGGugCGga -5'
12528 5' -57.9 NC_003345.1 + 45981 0.74 0.260791
Target:  5'- aCGACgGGCGGGug-UGAGCC-UGCCUa -3'
miRNA:   3'- -GCUGgCCGCCCuuaGCUUGGuGCGGA- -5'
12528 5' -57.9 NC_003345.1 + 20950 0.76 0.213926
Target:  5'- gGACgGGC-GGAAUCGAACCGC-CCUa -3'
miRNA:   3'- gCUGgCCGcCCUUAGCUUGGUGcGGA- -5'
12528 5' -57.9 NC_003345.1 + 19796 0.95 0.010496
Target:  5'- gCGACCGGC-GGAAUCGAACCACGCCUu -3'
miRNA:   3'- -GCUGGCCGcCCUUAGCUUGGUGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.