Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12529 | 5' | -55.6 | NC_003345.1 | + | 59760 | 0.66 | 0.828316 |
Target: 5'- gCGGuGGuuuGGUUG-ACUCagguuaucAGUCAGCCg -3' miRNA: 3'- -GCC-CCu--CCAGCuUGAGgu------UCAGUCGG- -5' |
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12529 | 5' | -55.6 | NC_003345.1 | + | 24598 | 0.66 | 0.810451 |
Target: 5'- -cGGGAGGUCGccCUCgAAGUacggaacGCCa -3' miRNA: 3'- gcCCCUCCAGCuuGAGgUUCAgu-----CGG- -5' |
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12529 | 5' | -55.6 | NC_003345.1 | + | 55508 | 0.66 | 0.809538 |
Target: 5'- aCGGGGGaGUCGAagucucggaugGCUCCGGucuaaacGUCGGUg -3' miRNA: 3'- -GCCCCUcCAGCU-----------UGAGGUU-------CAGUCGg -5' |
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12529 | 5' | -55.6 | NC_003345.1 | + | 61719 | 0.66 | 0.801251 |
Target: 5'- uCGGGGAGaGUCuGACUUCuaccUCaAGCCg -3' miRNA: 3'- -GCCCCUC-CAGcUUGAGGuuc-AG-UCGG- -5' |
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12529 | 5' | -55.6 | NC_003345.1 | + | 4608 | 0.66 | 0.800322 |
Target: 5'- uCGGuGGAGGUaau-CUCCGaccuucaauucgaGGUCGGCUu -3' miRNA: 3'- -GCC-CCUCCAgcuuGAGGU-------------UCAGUCGG- -5' |
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12529 | 5' | -55.6 | NC_003345.1 | + | 74295 | 0.67 | 0.762899 |
Target: 5'- aGGGGcaGUCGAACUCgCGuaUCAGCg -3' miRNA: 3'- gCCCCucCAGCUUGAG-GUucAGUCGg -5' |
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12529 | 5' | -55.6 | NC_003345.1 | + | 32151 | 0.67 | 0.762899 |
Target: 5'- uGGGaGAGGUCGcgucguucuuCUCgAAGUCgugggaAGCCg -3' miRNA: 3'- gCCC-CUCCAGCuu--------GAGgUUCAG------UCGG- -5' |
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12529 | 5' | -55.6 | NC_003345.1 | + | 15436 | 0.67 | 0.752972 |
Target: 5'- uCGGGGucGUCGuuCUCCGGG-UAGaCCu -3' miRNA: 3'- -GCCCCucCAGCuuGAGGUUCaGUC-GG- -5' |
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12529 | 5' | -55.6 | NC_003345.1 | + | 3013 | 0.68 | 0.712219 |
Target: 5'- cCGGGGA-GUCGAACcCCGG---AGCCg -3' miRNA: 3'- -GCCCCUcCAGCUUGaGGUUcagUCGG- -5' |
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12529 | 5' | -55.6 | NC_003345.1 | + | 34167 | 0.68 | 0.69136 |
Target: 5'- cCGGGGAuuccgaugaGGUCGAAgUCgGGGUUAGa- -3' miRNA: 3'- -GCCCCU---------CCAGCUUgAGgUUCAGUCgg -5' |
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12529 | 5' | -55.6 | NC_003345.1 | + | 67686 | 0.69 | 0.617185 |
Target: 5'- aCGGGGuGGUCGcGCUuUCGAG--GGCCa -3' miRNA: 3'- -GCCCCuCCAGCuUGA-GGUUCagUCGG- -5' |
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12529 | 5' | -55.6 | NC_003345.1 | + | 20232 | 0.69 | 0.610811 |
Target: 5'- cCGGGGAcggacuugccacggaGGUCGAACac---GUCGGCCa -3' miRNA: 3'- -GCCCCU---------------CCAGCUUGagguuCAGUCGG- -5' |
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12529 | 5' | -55.6 | NC_003345.1 | + | 71556 | 0.7 | 0.585397 |
Target: 5'- uGGGGAGGUC-AAgUCCcgaGAGUCGGg- -3' miRNA: 3'- gCCCCUCCAGcUUgAGG---UUCAGUCgg -5' |
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12529 | 5' | -55.6 | NC_003345.1 | + | 65800 | 0.72 | 0.482832 |
Target: 5'- aCGGuGGGGGUgaGAGCUUCAAcaucGUCGGUCa -3' miRNA: 3'- -GCC-CCUCCAg-CUUGAGGUU----CAGUCGG- -5' |
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12529 | 5' | -55.6 | NC_003345.1 | + | 77008 | 0.73 | 0.416424 |
Target: 5'- uCGGGGAgcuGGUCGAGCcaaUCCGGGUCGa-- -3' miRNA: 3'- -GCCCCU---CCAGCUUG---AGGUUCAGUcgg -5' |
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12529 | 5' | -55.6 | NC_003345.1 | + | 36351 | 0.74 | 0.355904 |
Target: 5'- uGGGGucguaGGcGUCGuagGACUUCAAGUUAGCCa -3' miRNA: 3'- gCCCC-----UC-CAGC---UUGAGGUUCAGUCGG- -5' |
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12529 | 5' | -55.6 | NC_003345.1 | + | 61182 | 0.76 | 0.267252 |
Target: 5'- gCGGcGGAGGUCGcACUCCAAacUCGGCa -3' miRNA: 3'- -GCC-CCUCCAGCuUGAGGUUc-AGUCGg -5' |
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12529 | 5' | -55.6 | NC_003345.1 | + | 65927 | 0.84 | 0.085797 |
Target: 5'- uCGGGGAGGUCGGAUUCCcguagcGGGUC-GCCu -3' miRNA: 3'- -GCCCCUCCAGCUUGAGG------UUCAGuCGG- -5' |
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12529 | 5' | -55.6 | NC_003345.1 | + | 20130 | 1.12 | 0.000931 |
Target: 5'- uCGGGGAGGUCGAACUCCAAGUCAGCCg -3' miRNA: 3'- -GCCCCUCCAGCUUGAGGUUCAGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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