miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1253 5' -52.3 NC_001317.1 + 18213 0.66 0.72407
Target:  5'- gUCGCAGUGggGgCGGCUauuguGGCUGGUg- -3'
miRNA:   3'- -GGUGUCGCaaUgGCCGG-----UCGAUUAgu -5'
1253 5' -52.3 NC_001317.1 + 817 0.66 0.72407
Target:  5'- cCCGCGGCGgguguauuugGCCggugaGGCCAGUagcuUGAUUAg -3'
miRNA:   3'- -GGUGUCGCaa--------UGG-----CCGGUCG----AUUAGU- -5'
1253 5' -52.3 NC_001317.1 + 9926 0.66 0.689611
Target:  5'- cCCACcauguGCGcgaacgACCGGCgCGGgUGGUCAg -3'
miRNA:   3'- -GGUGu----CGCaa----UGGCCG-GUCgAUUAGU- -5'
1253 5' -52.3 NC_001317.1 + 13368 0.67 0.6663
Target:  5'- gCACAGCGcgGCgcacaGGCCAGCa----- -3'
miRNA:   3'- gGUGUCGCaaUGg----CCGGUCGauuagu -5'
1253 5' -52.3 NC_001317.1 + 15938 0.67 0.654583
Target:  5'- gCCAgCAGUGcugACCGGUCAGggAAUUAc -3'
miRNA:   3'- -GGU-GUCGCaa-UGGCCGGUCgaUUAGU- -5'
1253 5' -52.3 NC_001317.1 + 17033 0.68 0.588877
Target:  5'- cCCGCAGCGccugcugcggccaugUUACCGGCaAGCUc---- -3'
miRNA:   3'- -GGUGUCGC---------------AAUGGCCGgUCGAuuagu -5'
1253 5' -52.3 NC_001317.1 + 6051 0.69 0.515431
Target:  5'- -uGCGGCGgucAUCGGCCAGCUuaacCAg -3'
miRNA:   3'- ggUGUCGCaa-UGGCCGGUCGAuua-GU- -5'
1253 5' -52.3 NC_001317.1 + 19072 0.71 0.41926
Target:  5'- gUACAGUG-UACCGGCaAGCUGuAUCGa -3'
miRNA:   3'- gGUGUCGCaAUGGCCGgUCGAU-UAGU- -5'
1253 5' -52.3 NC_001317.1 + 8367 0.74 0.285763
Target:  5'- gCuCAGUGUUGCCGGUCAGCUc---- -3'
miRNA:   3'- gGuGUCGCAAUGGCCGGUCGAuuagu -5'
1253 5' -52.3 NC_001317.1 + 18253 0.75 0.24938
Target:  5'- cCCACuGCGacaAUCGGCCAGgUAAUCGc -3'
miRNA:   3'- -GGUGuCGCaa-UGGCCGGUCgAUUAGU- -5'
1253 5' -52.3 NC_001317.1 + 14858 0.75 0.242579
Target:  5'- gCAgGGCGUUACCGGCauCAGCgccUCAg -3'
miRNA:   3'- gGUgUCGCAAUGGCCG--GUCGauuAGU- -5'
1253 5' -52.3 NC_001317.1 + 910 1.11 0.000642
Target:  5'- gCCACAGCGUUACCGGCCAGCUAAUCAa -3'
miRNA:   3'- -GGUGUCGCAAUGGCCGGUCGAUUAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.