miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12531 3' -56.5 NC_003345.1 + 44552 0.66 0.759772
Target:  5'- cGCCGCGcUCCugaACUcaaAUGUCCUUGaCUu -3'
miRNA:   3'- -CGGCGC-AGGuggUGG---UACAGGAAC-GG- -5'
12531 3' -56.5 NC_003345.1 + 50021 0.66 0.758784
Target:  5'- aCCGCcaccUCCACCGCCGgagCCgccggagccuucgUUGCCg -3'
miRNA:   3'- cGGCGc---AGGUGGUGGUacaGG-------------AACGG- -5'
12531 3' -56.5 NC_003345.1 + 26057 0.66 0.739789
Target:  5'- uGCCGCGUUC-UgACCGUG-CCggauguggGCCu -3'
miRNA:   3'- -CGGCGCAGGuGgUGGUACaGGaa------CGG- -5'
12531 3' -56.5 NC_003345.1 + 73415 0.66 0.739789
Target:  5'- cGCUcaGCcaCCGCCGCCggGUUC-UGCCg -3'
miRNA:   3'- -CGG--CGcaGGUGGUGGuaCAGGaACGG- -5'
12531 3' -56.5 NC_003345.1 + 40155 0.67 0.677748
Target:  5'- aGCCGCGUUCgaGCCGCUGUaUCaa-GCCg -3'
miRNA:   3'- -CGGCGCAGG--UGGUGGUAcAGgaaCGG- -5'
12531 3' -56.5 NC_003345.1 + 50308 0.67 0.677748
Target:  5'- uGUCGUcaCCACCGCCAUcUCC--GCCa -3'
miRNA:   3'- -CGGCGcaGGUGGUGGUAcAGGaaCGG- -5'
12531 3' -56.5 NC_003345.1 + 21098 0.68 0.635447
Target:  5'- cGCCGC-UCgCGCCGCUGUuGUUgUUGCUa -3'
miRNA:   3'- -CGGCGcAG-GUGGUGGUA-CAGgAACGG- -5'
12531 3' -56.5 NC_003345.1 + 49844 0.69 0.603658
Target:  5'- cGCCGUGUCUgaaGCCGgUgaggGUGUUCUUGaCCg -3'
miRNA:   3'- -CGGCGCAGG---UGGUgG----UACAGGAAC-GG- -5'
12531 3' -56.5 NC_003345.1 + 76809 0.7 0.49032
Target:  5'- gGCCGgGUUCGCUcuCCGUGUCUgUUGUCa -3'
miRNA:   3'- -CGGCgCAGGUGGu-GGUACAGG-AACGG- -5'
12531 3' -56.5 NC_003345.1 + 2507 0.71 0.470706
Target:  5'- cGUCGCuGUugaugggaaCCAUCACgGUGUCaCUUGCCu -3'
miRNA:   3'- -CGGCG-CA---------GGUGGUGgUACAG-GAACGG- -5'
12531 3' -56.5 NC_003345.1 + 28624 0.71 0.469735
Target:  5'- uGCCGCGUcaagagccaacucCCACCGCUua-UCCUcgaacUGCCa -3'
miRNA:   3'- -CGGCGCA-------------GGUGGUGGuacAGGA-----ACGG- -5'
12531 3' -56.5 NC_003345.1 + 15267 0.74 0.330431
Target:  5'- cCCGagGUCUuCCGCaAUGUCCUUGCCg -3'
miRNA:   3'- cGGCg-CAGGuGGUGgUACAGGAACGG- -5'
12531 3' -56.5 NC_003345.1 + 50680 0.75 0.293389
Target:  5'- cGCCaGCGUCC-CCGCCGUuUCCaccGCCg -3'
miRNA:   3'- -CGG-CGCAGGuGGUGGUAcAGGaa-CGG- -5'
12531 3' -56.5 NC_003345.1 + 22573 1.14 0.000529
Target:  5'- aGCCGCGUCCACCACCAUGUCCUUGCCa -3'
miRNA:   3'- -CGGCGCAGGUGGUGGUACAGGAACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.