Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12531 | 5' | -56.8 | NC_003345.1 | + | 8095 | 0.68 | 0.616295 |
Target: 5'- aAGGCCGGUCAgu-UGACcGACCC-Cg -3' miRNA: 3'- cUCCGGCCAGUaucGCUGcUUGGGaG- -5' |
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12531 | 5' | -56.8 | NC_003345.1 | + | 15459 | 0.68 | 0.616295 |
Target: 5'- cGGGCCGuGguUCGUAGaaauGAUGAguGCCCUCg -3' miRNA: 3'- cUCCGGC-C--AGUAUCg---CUGCU--UGGGAG- -5' |
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12531 | 5' | -56.8 | NC_003345.1 | + | 19260 | 0.69 | 0.539267 |
Target: 5'- aGAGGCagaGGUCGaAGUGGCGAagcaggaagcucguGCCCa- -3' miRNA: 3'- -CUCCGg--CCAGUaUCGCUGCU--------------UGGGag -5' |
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12531 | 5' | -56.8 | NC_003345.1 | + | 20353 | 0.67 | 0.680231 |
Target: 5'- cGGGCCGGuugguUCAUcgaaggagacAGCGGCGGcCCCa- -3' miRNA: 3'- cUCCGGCC-----AGUA----------UCGCUGCUuGGGag -5' |
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12531 | 5' | -56.8 | NC_003345.1 | + | 21333 | 0.66 | 0.711747 |
Target: 5'- gGAGcGCCGuuGUCGUcGGUGGCGAACCa-- -3' miRNA: 3'- -CUC-CGGC--CAGUA-UCGCUGCUUGGgag -5' |
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12531 | 5' | -56.8 | NC_003345.1 | + | 22538 | 1.08 | 0.001171 |
Target: 5'- aGAGGCCGGUCAUAGCGACGAACCCUCc -3' miRNA: 3'- -CUCCGGCCAGUAUCGCUGCUUGGGAG- -5' |
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12531 | 5' | -56.8 | NC_003345.1 | + | 32179 | 0.71 | 0.442748 |
Target: 5'- cGAGGCCGGUCuugucGGUGucuuCGuACCCUUc -3' miRNA: 3'- -CUCCGGCCAGua---UCGCu---GCuUGGGAG- -5' |
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12531 | 5' | -56.8 | NC_003345.1 | + | 33167 | 0.67 | 0.637651 |
Target: 5'- cGGGUuggCGGUCGgccCGGCGuAGCCCUCg -3' miRNA: 3'- cUCCG---GCCAGUaucGCUGC-UUGGGAG- -5' |
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12531 | 5' | -56.8 | NC_003345.1 | + | 33847 | 0.67 | 0.644058 |
Target: 5'- cGGGUCGGUCGgcaucccguacucGGCGGCGAggucaacguACaCCUCg -3' miRNA: 3'- cUCCGGCCAGUa------------UCGCUGCU---------UG-GGAG- -5' |
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12531 | 5' | -56.8 | NC_003345.1 | + | 34511 | 0.68 | 0.59499 |
Target: 5'- cGAGuCCGGUCu--GCGACuguCCCUCa -3' miRNA: 3'- -CUCcGGCCAGuauCGCUGcuuGGGAG- -5' |
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12531 | 5' | -56.8 | NC_003345.1 | + | 43189 | 0.72 | 0.362549 |
Target: 5'- cGGGCCGuGUCGUacAGCGGCauccGAACCCg- -3' miRNA: 3'- cUCCGGC-CAGUA--UCGCUG----CUUGGGag -5' |
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12531 | 5' | -56.8 | NC_003345.1 | + | 45976 | 0.69 | 0.54238 |
Target: 5'- -cGGCCcaauccucggGGUCAagccccgugcgAGCGGCGAACCaCUCg -3' miRNA: 3'- cuCCGG----------CCAGUa----------UCGCUGCUUGG-GAG- -5' |
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12531 | 5' | -56.8 | NC_003345.1 | + | 60224 | 0.69 | 0.511546 |
Target: 5'- -uGGCCGaGUCGUGGCG--GAACgCUCa -3' miRNA: 3'- cuCCGGC-CAGUAUCGCugCUUGgGAG- -5' |
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12531 | 5' | -56.8 | NC_003345.1 | + | 62854 | 0.66 | 0.690793 |
Target: 5'- gGAGGCCaG-CGUAGgcccCGACGuggaguAGCCCUCa -3' miRNA: 3'- -CUCCGGcCaGUAUC----GCUGC------UUGGGAG- -5' |
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12531 | 5' | -56.8 | NC_003345.1 | + | 63409 | 0.66 | 0.722119 |
Target: 5'- aGGGGCCGGUg--AGCGAgGAcgcAUCCg- -3' miRNA: 3'- -CUCCGGCCAguaUCGCUgCU---UGGGag -5' |
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12531 | 5' | -56.8 | NC_003345.1 | + | 71634 | 0.7 | 0.481463 |
Target: 5'- --cGCCGGgCGUGGCGACaggguacaGAACCCUg -3' miRNA: 3'- cucCGGCCaGUAUCGCUG--------CUUGGGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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