Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12536 | 5' | -50.8 | NC_003345.1 | + | 68657 | 0.66 | 0.966722 |
Target: 5'- --aUCCCGguCGCCAucGGGAuGUGGUAGu -3' miRNA: 3'- ccaAGGGU--GUGGUcaUCCU-CAUCAUC- -5' |
|||||||
12536 | 5' | -50.8 | NC_003345.1 | + | 41115 | 0.66 | 0.957015 |
Target: 5'- ---aCCaCACACCGGgggauuauaaaacgGGGGGUAGUGu -3' miRNA: 3'- ccaaGG-GUGUGGUCa-------------UCCUCAUCAUc -5' |
|||||||
12536 | 5' | -50.8 | NC_003345.1 | + | 35637 | 0.66 | 0.955367 |
Target: 5'- ---gCCCACACCG--AGGAGaUGGUGa -3' miRNA: 3'- ccaaGGGUGUGGUcaUCCUC-AUCAUc -5' |
|||||||
12536 | 5' | -50.8 | NC_003345.1 | + | 6116 | 0.67 | 0.946484 |
Target: 5'- gGGuUUCCCAU-CCAGUccucGGGGUAGUc- -3' miRNA: 3'- -CC-AAGGGUGuGGUCAu---CCUCAUCAuc -5' |
|||||||
12536 | 5' | -50.8 | NC_003345.1 | + | 55468 | 0.67 | 0.935451 |
Target: 5'- cGGUgaagacgcaaugCCCaACACCGGaGGGGGUGGcGGc -3' miRNA: 3'- -CCAa-----------GGG-UGUGGUCaUCCUCAUCaUC- -5' |
|||||||
12536 | 5' | -50.8 | NC_003345.1 | + | 67286 | 0.67 | 0.923663 |
Target: 5'- cGGUUuugaCCUcggcggcaacgaaaGCGaCGGUGGGAGUGGUGGg -3' miRNA: 3'- -CCAA----GGG--------------UGUgGUCAUCCUCAUCAUC- -5' |
|||||||
12536 | 5' | -50.8 | NC_003345.1 | + | 38717 | 0.68 | 0.91322 |
Target: 5'- aGUcggCCCGCGCCGugGGGAGccgAGUAGu -3' miRNA: 3'- cCAa--GGGUGUGGUcaUCCUCa--UCAUC- -5' |
|||||||
12536 | 5' | -50.8 | NC_003345.1 | + | 47957 | 0.71 | 0.769144 |
Target: 5'- aGUgCCCACGCCAcgAGGGGUGGg-- -3' miRNA: 3'- cCAaGGGUGUGGUcaUCCUCAUCauc -5' |
|||||||
12536 | 5' | -50.8 | NC_003345.1 | + | 28401 | 1.13 | 0.002568 |
Target: 5'- cGGUUCCCACACCAGUAGGAGUAGUAGa -3' miRNA: 3'- -CCAAGGGUGUGGUCAUCCUCAUCAUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home