Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 12537 | 5' | -58.9 | NC_003345.1 | + | 8441 | 0.67 | 0.518525 |
|
Target: 5'- cGCCCAuccAUCCU-CCACGGUCUgcUCGAu -3' miRNA: 3'- -CGGGU---UAGGAgGGUGCCGGGguAGUU- -5' |
|||||||
| 12537 | 5' | -58.9 | NC_003345.1 | + | 66596 | 0.67 | 0.498386 |
|
Target: 5'- aGCCC-GUCCgUCUCu--GCCCCAUCGAg -3' miRNA: 3'- -CGGGuUAGG-AGGGugcCGGGGUAGUU- -5' |
|||||||
| 12537 | 5' | -58.9 | NC_003345.1 | + | 46606 | 0.68 | 0.459213 |
|
Target: 5'- gGCCCGGcucaccguUCCg-CCAC-GCCCCGUCAAu -3' miRNA: 3'- -CGGGUU--------AGGagGGUGcCGGGGUAGUU- -5' |
|||||||
| 12537 | 5' | -58.9 | NC_003345.1 | + | 22293 | 0.68 | 0.448729 |
|
Target: 5'- cGUCCGAcuuucggacgugcUUCUCCCACcGCCCCAUgAu -3' miRNA: 3'- -CGGGUU-------------AGGAGGGUGcCGGGGUAgUu -5' |
|||||||
| 12537 | 5' | -58.9 | NC_003345.1 | + | 45977 | 0.69 | 0.394875 |
|
Target: 5'- gGCCCAAUCCUCggggUCAa-GCCCCGUgCGAg -3' miRNA: 3'- -CGGGUUAGGAG----GGUgcCGGGGUA-GUU- -5' |
|||||||
| 12537 | 5' | -58.9 | NC_003345.1 | + | 28549 | 1.07 | 0.000762 |
|
Target: 5'- cGCCCAAUCCUCCCACGGCCCCAUCAAc -3' miRNA: 3'- -CGGGUUAGGAGGGUGCCGGGGUAGUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home