miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12538 5' -55.2 NC_003345.1 + 20326 0.66 0.823905
Target:  5'- ---aGCGGCGgccccaccGGAGGGaGCGUCGu -3'
miRNA:   3'- gcaaCGCCGCacu-----UCUUCC-CGCAGCc -5'
12538 5' -55.2 NC_003345.1 + 37174 0.66 0.81499
Target:  5'- --gUGUGGC-UGAuGAAGGGUucgugGUCGGu -3'
miRNA:   3'- gcaACGCCGcACUuCUUCCCG-----CAGCC- -5'
12538 5' -55.2 NC_003345.1 + 8339 0.67 0.796633
Target:  5'- ---aGCaGacCGUGGAGGAuggauGGGCGUCGGa -3'
miRNA:   3'- gcaaCGcC--GCACUUCUU-----CCCGCAGCC- -5'
12538 5' -55.2 NC_003345.1 + 72509 0.67 0.78721
Target:  5'- aGUUGUGGaGU--AGAAGGGCGacCGGc -3'
miRNA:   3'- gCAACGCCgCAcuUCUUCCCGCa-GCC- -5'
12538 5' -55.2 NC_003345.1 + 30545 0.68 0.738046
Target:  5'- aCGUUGUuauCGUGGuuccGAAGGGCGUCa- -3'
miRNA:   3'- -GCAACGcc-GCACUu---CUUCCCGCAGcc -5'
12538 5' -55.2 NC_003345.1 + 29066 0.69 0.665336
Target:  5'- uCGUcGUGGgG-GAAGAAGGGCGgagaaGGc -3'
miRNA:   3'- -GCAaCGCCgCaCUUCUUCCCGCag---CC- -5'
12538 5' -55.2 NC_003345.1 + 61524 0.71 0.559703
Target:  5'- ---aGCGGCGgc--GAAGGGCGUUGa -3'
miRNA:   3'- gcaaCGCCGCacuuCUUCCCGCAGCc -5'
12538 5' -55.2 NC_003345.1 + 69574 0.72 0.488447
Target:  5'- cCGggcgGCGGCGUGAcgcAGAcugcucccucGGCGUCGGg -3'
miRNA:   3'- -GCaa--CGCCGCACU---UCUuc--------CCGCAGCC- -5'
12538 5' -55.2 NC_003345.1 + 28801 1.1 0.001612
Target:  5'- cCGUUGCGGCGUGAAGAAGGGCGUCGGc -3'
miRNA:   3'- -GCAACGCCGCACUUCUUCCCGCAGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.