Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12538 | 5' | -55.2 | NC_003345.1 | + | 20326 | 0.66 | 0.823905 |
Target: 5'- ---aGCGGCGgccccaccGGAGGGaGCGUCGu -3' miRNA: 3'- gcaaCGCCGCacu-----UCUUCC-CGCAGCc -5' |
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12538 | 5' | -55.2 | NC_003345.1 | + | 37174 | 0.66 | 0.81499 |
Target: 5'- --gUGUGGC-UGAuGAAGGGUucgugGUCGGu -3' miRNA: 3'- gcaACGCCGcACUuCUUCCCG-----CAGCC- -5' |
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12538 | 5' | -55.2 | NC_003345.1 | + | 8339 | 0.67 | 0.796633 |
Target: 5'- ---aGCaGacCGUGGAGGAuggauGGGCGUCGGa -3' miRNA: 3'- gcaaCGcC--GCACUUCUU-----CCCGCAGCC- -5' |
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12538 | 5' | -55.2 | NC_003345.1 | + | 72509 | 0.67 | 0.78721 |
Target: 5'- aGUUGUGGaGU--AGAAGGGCGacCGGc -3' miRNA: 3'- gCAACGCCgCAcuUCUUCCCGCa-GCC- -5' |
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12538 | 5' | -55.2 | NC_003345.1 | + | 30545 | 0.68 | 0.738046 |
Target: 5'- aCGUUGUuauCGUGGuuccGAAGGGCGUCa- -3' miRNA: 3'- -GCAACGcc-GCACUu---CUUCCCGCAGcc -5' |
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12538 | 5' | -55.2 | NC_003345.1 | + | 29066 | 0.69 | 0.665336 |
Target: 5'- uCGUcGUGGgG-GAAGAAGGGCGgagaaGGc -3' miRNA: 3'- -GCAaCGCCgCaCUUCUUCCCGCag---CC- -5' |
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12538 | 5' | -55.2 | NC_003345.1 | + | 61524 | 0.71 | 0.559703 |
Target: 5'- ---aGCGGCGgc--GAAGGGCGUUGa -3' miRNA: 3'- gcaaCGCCGCacuuCUUCCCGCAGCc -5' |
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12538 | 5' | -55.2 | NC_003345.1 | + | 69574 | 0.72 | 0.488447 |
Target: 5'- cCGggcgGCGGCGUGAcgcAGAcugcucccucGGCGUCGGg -3' miRNA: 3'- -GCaa--CGCCGCACU---UCUuc--------CCGCAGCC- -5' |
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12538 | 5' | -55.2 | NC_003345.1 | + | 28801 | 1.1 | 0.001612 |
Target: 5'- cCGUUGCGGCGUGAAGAAGGGCGUCGGc -3' miRNA: 3'- -GCAACGCCGCACUUCUUCCCGCAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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