miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12539 3' -56.3 NC_003345.1 + 759 0.66 0.757289
Target:  5'- aUCUcCCCCCGaacgguCGGgGGCGGGUAa-- -3'
miRNA:   3'- aAGAaGGGGGU------GCUgCUGCCCGUaac -5'
12539 3' -56.3 NC_003345.1 + 64206 0.66 0.747189
Target:  5'- --aUUCCCCCGCcuguucacACGGCaGGUAUUGa -3'
miRNA:   3'- aagAAGGGGGUGc-------UGCUGcCCGUAAC- -5'
12539 3' -56.3 NC_003345.1 + 21667 0.66 0.736977
Target:  5'- gUCUUCgcuCUCCGCGuCGuCGGGCAg-- -3'
miRNA:   3'- aAGAAG---GGGGUGCuGCuGCCCGUaac -5'
12539 3' -56.3 NC_003345.1 + 44754 0.66 0.736977
Target:  5'- gUCgcUCCCCCACGA-GACGGuaGCGg-- -3'
miRNA:   3'- aAGa-AGGGGGUGCUgCUGCC--CGUaac -5'
12539 3' -56.3 NC_003345.1 + 38614 0.69 0.53539
Target:  5'- cUCggCuCCCCACGGCG-CGGGCc--- -3'
miRNA:   3'- aAGaaG-GGGGUGCUGCuGCCCGuaac -5'
12539 3' -56.3 NC_003345.1 + 52527 0.71 0.464613
Target:  5'- aUCgaCCCCgACaACGACGGGCAg-- -3'
miRNA:   3'- aAGaaGGGGgUGcUGCUGCCCGUaac -5'
12539 3' -56.3 NC_003345.1 + 33516 0.71 0.417161
Target:  5'- gUUCUUCCUCUACGACGACGa-UAUUGc -3'
miRNA:   3'- -AAGAAGGGGGUGCUGCUGCccGUAAC- -5'
12539 3' -56.3 NC_003345.1 + 29160 1.06 0.001706
Target:  5'- cUUCUUCCCCCACGACGACGGGCAUUGg -3'
miRNA:   3'- -AAGAAGGGGGUGCUGCUGCCCGUAAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.