Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12539 | 3' | -56.3 | NC_003345.1 | + | 759 | 0.66 | 0.757289 |
Target: 5'- aUCUcCCCCCGaacgguCGGgGGCGGGUAa-- -3' miRNA: 3'- aAGAaGGGGGU------GCUgCUGCCCGUaac -5' |
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12539 | 3' | -56.3 | NC_003345.1 | + | 64206 | 0.66 | 0.747189 |
Target: 5'- --aUUCCCCCGCcuguucacACGGCaGGUAUUGa -3' miRNA: 3'- aagAAGGGGGUGc-------UGCUGcCCGUAAC- -5' |
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12539 | 3' | -56.3 | NC_003345.1 | + | 21667 | 0.66 | 0.736977 |
Target: 5'- gUCUUCgcuCUCCGCGuCGuCGGGCAg-- -3' miRNA: 3'- aAGAAG---GGGGUGCuGCuGCCCGUaac -5' |
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12539 | 3' | -56.3 | NC_003345.1 | + | 44754 | 0.66 | 0.736977 |
Target: 5'- gUCgcUCCCCCACGA-GACGGuaGCGg-- -3' miRNA: 3'- aAGa-AGGGGGUGCUgCUGCC--CGUaac -5' |
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12539 | 3' | -56.3 | NC_003345.1 | + | 38614 | 0.69 | 0.53539 |
Target: 5'- cUCggCuCCCCACGGCG-CGGGCc--- -3' miRNA: 3'- aAGaaG-GGGGUGCUGCuGCCCGuaac -5' |
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12539 | 3' | -56.3 | NC_003345.1 | + | 52527 | 0.71 | 0.464613 |
Target: 5'- aUCgaCCCCgACaACGACGGGCAg-- -3' miRNA: 3'- aAGaaGGGGgUGcUGCUGCCCGUaac -5' |
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12539 | 3' | -56.3 | NC_003345.1 | + | 33516 | 0.71 | 0.417161 |
Target: 5'- gUUCUUCCUCUACGACGACGa-UAUUGc -3' miRNA: 3'- -AAGAAGGGGGUGCUGCUGCccGUAAC- -5' |
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12539 | 3' | -56.3 | NC_003345.1 | + | 29160 | 1.06 | 0.001706 |
Target: 5'- cUUCUUCCCCCACGACGACGGGCAUUGg -3' miRNA: 3'- -AAGAAGGGGGUGCUGCUGCCCGUAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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