Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12540 | 3' | -57.2 | NC_003345.1 | + | 2473 | 0.68 | 0.62759 |
Target: 5'- aGGCUACGGaaaGCUUCgAGGUCGGg- -3' miRNA: 3'- -CCGGUGCCcugCGGAGgUUUAGCCag -5' |
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12540 | 3' | -57.2 | NC_003345.1 | + | 5085 | 0.66 | 0.720591 |
Target: 5'- uGCCGCuGGugGuucgucgucguccCCUCCGucccUCGGUCg -3' miRNA: 3'- cCGGUGcCCugC-------------GGAGGUuu--AGCCAG- -5' |
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12540 | 3' | -57.2 | NC_003345.1 | + | 8210 | 0.67 | 0.669737 |
Target: 5'- aGGCUuCGGGuCGUCg--GGGUCGGUCa -3' miRNA: 3'- -CCGGuGCCCuGCGGaggUUUAGCCAG- -5' |
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12540 | 3' | -57.2 | NC_003345.1 | + | 12228 | 0.66 | 0.701038 |
Target: 5'- cGCCACGGuGCgGCUUCCGGGUUGuUCc -3' miRNA: 3'- cCGGUGCCcUG-CGGAGGUUUAGCcAG- -5' |
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12540 | 3' | -57.2 | NC_003345.1 | + | 22732 | 0.69 | 0.554273 |
Target: 5'- aGCCGCcGGACGCCUUCGuucuGUUcGUCg -3' miRNA: 3'- cCGGUGcCCUGCGGAGGUu---UAGcCAG- -5' |
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12540 | 3' | -57.2 | NC_003345.1 | + | 22981 | 0.66 | 0.690653 |
Target: 5'- cGGCCcgaacggUGGGACGUUgaaUCCGGuGUCGGUUg -3' miRNA: 3'- -CCGGu------GCCCUGCGG---AGGUU-UAGCCAG- -5' |
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12540 | 3' | -57.2 | NC_003345.1 | + | 28766 | 0.66 | 0.721613 |
Target: 5'- -uCCACGGGAUGUUUCCGA--UGGg- -3' miRNA: 3'- ccGGUGCCCUGCGGAGGUUuaGCCag -5' |
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12540 | 3' | -57.2 | NC_003345.1 | + | 30725 | 1.11 | 0.000803 |
Target: 5'- gGGCCACGGGACGCCUCCAAAUCGGUCu -3' miRNA: 3'- -CCGGUGCCCUGCGGAGGUUUAGCCAG- -5' |
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12540 | 3' | -57.2 | NC_003345.1 | + | 32390 | 0.66 | 0.721613 |
Target: 5'- --aCACGGGgcgGCGCgUCCAucucAAUCGGcUCa -3' miRNA: 3'- ccgGUGCCC---UGCGgAGGU----UUAGCC-AG- -5' |
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12540 | 3' | -57.2 | NC_003345.1 | + | 45463 | 0.68 | 0.606503 |
Target: 5'- uGGUCGCGGGA-GCCgUCaCGGuacaCGGUCa -3' miRNA: 3'- -CCGGUGCCCUgCGG-AG-GUUua--GCCAG- -5' |
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12540 | 3' | -57.2 | NC_003345.1 | + | 57823 | 0.69 | 0.554273 |
Target: 5'- gGGUCGuCGGGA-GCCgCCAAGU-GGUCg -3' miRNA: 3'- -CCGGU-GCCCUgCGGaGGUUUAgCCAG- -5' |
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12540 | 3' | -57.2 | NC_003345.1 | + | 59495 | 0.67 | 0.648692 |
Target: 5'- cGCUACGGGAaucgGCgCUCUgcuGGUCGGUg -3' miRNA: 3'- cCGGUGCCCUg---CG-GAGGu--UUAGCCAg -5' |
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12540 | 3' | -57.2 | NC_003345.1 | + | 61184 | 0.68 | 0.585496 |
Target: 5'- gGGCgGCGGaGGuCGCaCUCCAAAcUCGG-Ca -3' miRNA: 3'- -CCGgUGCC-CU-GCG-GAGGUUU-AGCCaG- -5' |
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12540 | 3' | -57.2 | NC_003345.1 | + | 63407 | 0.69 | 0.52356 |
Target: 5'- gGGCCggugaGCGaGGACGCaUCCGAugUGGUCu -3' miRNA: 3'- -CCGG-----UGC-CCUGCGgAGGUUuaGCCAG- -5' |
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12540 | 3' | -57.2 | NC_003345.1 | + | 65073 | 0.66 | 0.711361 |
Target: 5'- aGGCCGUGGG-CGaCCUCCGGuaaUGGUg -3' miRNA: 3'- -CCGGUGCCCuGC-GGAGGUUua-GCCAg -5' |
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12540 | 3' | -57.2 | NC_003345.1 | + | 68582 | 0.66 | 0.701038 |
Target: 5'- -cCCACGGGugGCCccgcgaCCGAGcCGGg- -3' miRNA: 3'- ccGGUGCCCugCGGa-----GGUUUaGCCag -5' |
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12540 | 3' | -57.2 | NC_003345.1 | + | 75324 | 0.66 | 0.731783 |
Target: 5'- cGGCCcCGGuuACGCCggggaaCCGcacauuGGUCGGUCa -3' miRNA: 3'- -CCGGuGCCc-UGCGGa-----GGU------UUAGCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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