miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12541 5' -51.4 NC_003345.1 + 4468 0.66 0.952692
Target:  5'- -cGAcCGGCGUaUCGACCu-AAGCGa- -3'
miRNA:   3'- gaCU-GCCGCAaAGCUGGcuUUCGUcu -5'
12541 5' -51.4 NC_003345.1 + 45558 0.66 0.952692
Target:  5'- gUGACGGCucccgCGACC---AGCAGGu -3'
miRNA:   3'- gACUGCCGcaaa-GCUGGcuuUCGUCU- -5'
12541 5' -51.4 NC_003345.1 + 4378 0.67 0.933289
Target:  5'- gUGGCGGCcuacggUUCGACUccguAGCGGAg -3'
miRNA:   3'- gACUGCCGca----AAGCUGGcuu-UCGUCU- -5'
12541 5' -51.4 NC_003345.1 + 13523 0.67 0.921945
Target:  5'- -cGACGGCGaaaCGGCUGAccgGAGUAGc -3'
miRNA:   3'- gaCUGCCGCaaaGCUGGCU---UUCGUCu -5'
12541 5' -51.4 NC_003345.1 + 4629 0.67 0.921945
Target:  5'- uUGACGGaaggcCGUUcaacgcaaUCGACCGAGAGggaCAGGc -3'
miRNA:   3'- gACUGCC-----GCAA--------AGCUGGCUUUC---GUCU- -5'
12541 5' -51.4 NC_003345.1 + 67955 0.68 0.895967
Target:  5'- uCUGuucacuCGGCua-UCGACCGAcucGGGCAGGa -3'
miRNA:   3'- -GACu-----GCCGcaaAGCUGGCU---UUCGUCU- -5'
12541 5' -51.4 NC_003345.1 + 37713 0.68 0.873691
Target:  5'- aUGACGGCGgcacgacUCGAugugUCGAAAGCcGAc -3'
miRNA:   3'- gACUGCCGCaa-----AGCU----GGCUUUCGuCU- -5'
12541 5' -51.4 NC_003345.1 + 54673 0.69 0.865759
Target:  5'- uUGAUGGuCGUcUCGucaaauucACCGAuAGCGGAg -3'
miRNA:   3'- gACUGCC-GCAaAGC--------UGGCUuUCGUCU- -5'
12541 5' -51.4 NC_003345.1 + 11592 0.69 0.849176
Target:  5'- -gGACGGCGaa--GACCGcaacuGGCGGAa -3'
miRNA:   3'- gaCUGCCGCaaagCUGGCuu---UCGUCU- -5'
12541 5' -51.4 NC_003345.1 + 26344 0.7 0.813356
Target:  5'- -aGACGaGUucUUCGgcacGCCGAGAGCAGAc -3'
miRNA:   3'- gaCUGC-CGcaAAGC----UGGCUUUCGUCU- -5'
12541 5' -51.4 NC_003345.1 + 53209 0.7 0.794269
Target:  5'- uUGACGGCGagaCGACCGuucagGAAGCAc- -3'
miRNA:   3'- gACUGCCGCaaaGCUGGC-----UUUCGUcu -5'
12541 5' -51.4 NC_003345.1 + 73899 0.72 0.712063
Target:  5'- -aGACGGaCGUUUCG-CUGuucGAGCAGGa -3'
miRNA:   3'- gaCUGCC-GCAAAGCuGGCu--UUCGUCU- -5'
12541 5' -51.4 NC_003345.1 + 59325 0.72 0.701315
Target:  5'- uUGACGGCc---CGACCGA--GCAGAa -3'
miRNA:   3'- gACUGCCGcaaaGCUGGCUuuCGUCU- -5'
12541 5' -51.4 NC_003345.1 + 50722 0.75 0.537864
Target:  5'- -cGAUGGUGUaaUUCGAgCGAAcgGGCAGAa -3'
miRNA:   3'- gaCUGCCGCA--AAGCUgGCUU--UCGUCU- -5'
12541 5' -51.4 NC_003345.1 + 4683 0.76 0.495881
Target:  5'- uUG-UGGCGcugUUCGACCGAGAGCuGGAa -3'
miRNA:   3'- gACuGCCGCa--AAGCUGGCUUUCG-UCU- -5'
12541 5' -51.4 NC_003345.1 + 31227 1.1 0.003557
Target:  5'- gCUGACGGCGUUUCGACCGAAAGCAGAg -3'
miRNA:   3'- -GACUGCCGCAAAGCUGGCUUUCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.