Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12542 | 5' | -56 | NC_003345.1 | + | 69726 | 0.66 | 0.762172 |
Target: 5'- -gACaACGGCacgaugGGUCGU-CgGCUCGAUGa -3' miRNA: 3'- aaUG-UGCCG------UCAGCAgGgCGAGCUAC- -5' |
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12542 | 5' | -56 | NC_003345.1 | + | 16818 | 0.66 | 0.752108 |
Target: 5'- --uCACGGCGGUCGUgCCaCGUUCc--- -3' miRNA: 3'- aauGUGCCGUCAGCA-GG-GCGAGcuac -5' |
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12542 | 5' | -56 | NC_003345.1 | + | 44637 | 0.66 | 0.741927 |
Target: 5'- -aGCGCGGCGaaaGUCuCCGUUCGGUu -3' miRNA: 3'- aaUGUGCCGUcagCAG-GGCGAGCUAc -5' |
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12542 | 5' | -56 | NC_003345.1 | + | 17124 | 0.67 | 0.678986 |
Target: 5'- aUACugGGUAGUac-CCCGUUCGGa- -3' miRNA: 3'- aAUGugCCGUCAgcaGGGCGAGCUac -5' |
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12542 | 5' | -56 | NC_003345.1 | + | 74961 | 0.68 | 0.614492 |
Target: 5'- --uUACGGUucaguAGUCGUCUCGCccccUCGAUGc -3' miRNA: 3'- aauGUGCCG-----UCAGCAGGGCG----AGCUAC- -5' |
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12542 | 5' | -56 | NC_003345.1 | + | 21494 | 0.68 | 0.603741 |
Target: 5'- ---uGCGGUucuUCGUCCCGUUCGAg- -3' miRNA: 3'- aaugUGCCGuc-AGCAGGGCGAGCUac -5' |
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12542 | 5' | -56 | NC_003345.1 | + | 11902 | 0.69 | 0.582317 |
Target: 5'- -aAC-CGGguGUCcuaCCUGCUCGAUGa -3' miRNA: 3'- aaUGuGCCguCAGca-GGGCGAGCUAC- -5' |
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12542 | 5' | -56 | NC_003345.1 | + | 22213 | 0.7 | 0.508963 |
Target: 5'- -gACGaguaGGCucuGUUcUCCCGCUCGAUGa -3' miRNA: 3'- aaUGUg---CCGu--CAGcAGGGCGAGCUAC- -5' |
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12542 | 5' | -56 | NC_003345.1 | + | 31653 | 1.06 | 0.001809 |
Target: 5'- aUUACACGGCAGUCGUCCCGCUCGAUGa -3' miRNA: 3'- -AAUGUGCCGUCAGCAGGGCGAGCUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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