miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12542 5' -56 NC_003345.1 + 69726 0.66 0.762172
Target:  5'- -gACaACGGCacgaugGGUCGU-CgGCUCGAUGa -3'
miRNA:   3'- aaUG-UGCCG------UCAGCAgGgCGAGCUAC- -5'
12542 5' -56 NC_003345.1 + 16818 0.66 0.752108
Target:  5'- --uCACGGCGGUCGUgCCaCGUUCc--- -3'
miRNA:   3'- aauGUGCCGUCAGCA-GG-GCGAGcuac -5'
12542 5' -56 NC_003345.1 + 44637 0.66 0.741927
Target:  5'- -aGCGCGGCGaaaGUCuCCGUUCGGUu -3'
miRNA:   3'- aaUGUGCCGUcagCAG-GGCGAGCUAc -5'
12542 5' -56 NC_003345.1 + 17124 0.67 0.678986
Target:  5'- aUACugGGUAGUac-CCCGUUCGGa- -3'
miRNA:   3'- aAUGugCCGUCAgcaGGGCGAGCUac -5'
12542 5' -56 NC_003345.1 + 74961 0.68 0.614492
Target:  5'- --uUACGGUucaguAGUCGUCUCGCccccUCGAUGc -3'
miRNA:   3'- aauGUGCCG-----UCAGCAGGGCG----AGCUAC- -5'
12542 5' -56 NC_003345.1 + 21494 0.68 0.603741
Target:  5'- ---uGCGGUucuUCGUCCCGUUCGAg- -3'
miRNA:   3'- aaugUGCCGuc-AGCAGGGCGAGCUac -5'
12542 5' -56 NC_003345.1 + 11902 0.69 0.582317
Target:  5'- -aAC-CGGguGUCcuaCCUGCUCGAUGa -3'
miRNA:   3'- aaUGuGCCguCAGca-GGGCGAGCUAC- -5'
12542 5' -56 NC_003345.1 + 22213 0.7 0.508963
Target:  5'- -gACGaguaGGCucuGUUcUCCCGCUCGAUGa -3'
miRNA:   3'- aaUGUg---CCGu--CAGcAGGGCGAGCUAC- -5'
12542 5' -56 NC_003345.1 + 31653 1.06 0.001809
Target:  5'- aUUACACGGCAGUCGUCCCGCUCGAUGa -3'
miRNA:   3'- -AAUGUGCCGUCAGCAGGGCGAGCUAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.