miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12543 3' -55.6 NC_003345.1 + 44635 0.66 0.794866
Target:  5'- cGCGGCGaaaGUCuCcgUUCGGuuuugauauuUCGGCUCc -3'
miRNA:   3'- -CGCCGCg--CAG-GuaGAGUU----------AGCCGAGu -5'
12543 3' -55.6 NC_003345.1 + 34516 0.66 0.779529
Target:  5'- cGCGGCGaGUCCGgucugcgacuguccCUCAAUcgCGGCgUCAa -3'
miRNA:   3'- -CGCCGCgCAGGUa-------------GAGUUA--GCCG-AGU- -5'
12543 3' -55.6 NC_003345.1 + 42086 0.66 0.765804
Target:  5'- aGCGGCcacGCG-CU-UCUCGcUCGGCUCc -3'
miRNA:   3'- -CGCCG---CGCaGGuAGAGUuAGCCGAGu -5'
12543 3' -55.6 NC_003345.1 + 46007 0.67 0.713865
Target:  5'- aGCGGCGaaccacuCGUCguaCUCGGUCGGgUCAg -3'
miRNA:   3'- -CGCCGC-------GCAGguaGAGUUAGCCgAGU- -5'
12543 3' -55.6 NC_003345.1 + 1692 0.68 0.662072
Target:  5'- aGCGGCGCGUaUAg--CAGUCGGCc-- -3'
miRNA:   3'- -CGCCGCGCAgGUagaGUUAGCCGagu -5'
12543 3' -55.6 NC_003345.1 + 72578 0.68 0.651386
Target:  5'- uUGGCGCGUCUucaaccaauggGUUgagUAcgCGGCUCAg -3'
miRNA:   3'- cGCCGCGCAGG-----------UAGa--GUuaGCCGAGU- -5'
12543 3' -55.6 NC_003345.1 + 32943 0.69 0.629973
Target:  5'- cGCGGCGaaCGUCCucgcgUUCAAgaaGGCUCu -3'
miRNA:   3'- -CGCCGC--GCAGGua---GAGUUag-CCGAGu -5'
12543 3' -55.6 NC_003345.1 + 46658 0.69 0.619265
Target:  5'- cGCGGCGgGaag--CUCcAUCGGCUCAc -3'
miRNA:   3'- -CGCCGCgCagguaGAGuUAGCCGAGU- -5'
12543 3' -55.6 NC_003345.1 + 39843 0.71 0.50392
Target:  5'- uUGGCGCGUCCAacCUCGAUgGG-UCGa -3'
miRNA:   3'- cGCCGCGCAGGUa-GAGUUAgCCgAGU- -5'
12543 3' -55.6 NC_003345.1 + 2918 0.72 0.444927
Target:  5'- -aGG-GCGUCCuUCUCGcGUUGGCUCAu -3'
miRNA:   3'- cgCCgCGCAGGuAGAGU-UAGCCGAGU- -5'
12543 3' -55.6 NC_003345.1 + 32384 1.1 0.001158
Target:  5'- gGCGGCGCGUCCAUCUCAAUCGGCUCAa -3'
miRNA:   3'- -CGCCGCGCAGGUAGAGUUAGCCGAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.