Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12543 | 3' | -55.6 | NC_003345.1 | + | 44635 | 0.66 | 0.794866 |
Target: 5'- cGCGGCGaaaGUCuCcgUUCGGuuuugauauuUCGGCUCc -3' miRNA: 3'- -CGCCGCg--CAG-GuaGAGUU----------AGCCGAGu -5' |
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12543 | 3' | -55.6 | NC_003345.1 | + | 34516 | 0.66 | 0.779529 |
Target: 5'- cGCGGCGaGUCCGgucugcgacuguccCUCAAUcgCGGCgUCAa -3' miRNA: 3'- -CGCCGCgCAGGUa-------------GAGUUA--GCCG-AGU- -5' |
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12543 | 3' | -55.6 | NC_003345.1 | + | 42086 | 0.66 | 0.765804 |
Target: 5'- aGCGGCcacGCG-CU-UCUCGcUCGGCUCc -3' miRNA: 3'- -CGCCG---CGCaGGuAGAGUuAGCCGAGu -5' |
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12543 | 3' | -55.6 | NC_003345.1 | + | 46007 | 0.67 | 0.713865 |
Target: 5'- aGCGGCGaaccacuCGUCguaCUCGGUCGGgUCAg -3' miRNA: 3'- -CGCCGC-------GCAGguaGAGUUAGCCgAGU- -5' |
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12543 | 3' | -55.6 | NC_003345.1 | + | 1692 | 0.68 | 0.662072 |
Target: 5'- aGCGGCGCGUaUAg--CAGUCGGCc-- -3' miRNA: 3'- -CGCCGCGCAgGUagaGUUAGCCGagu -5' |
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12543 | 3' | -55.6 | NC_003345.1 | + | 72578 | 0.68 | 0.651386 |
Target: 5'- uUGGCGCGUCUucaaccaauggGUUgagUAcgCGGCUCAg -3' miRNA: 3'- cGCCGCGCAGG-----------UAGa--GUuaGCCGAGU- -5' |
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12543 | 3' | -55.6 | NC_003345.1 | + | 32943 | 0.69 | 0.629973 |
Target: 5'- cGCGGCGaaCGUCCucgcgUUCAAgaaGGCUCu -3' miRNA: 3'- -CGCCGC--GCAGGua---GAGUUag-CCGAGu -5' |
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12543 | 3' | -55.6 | NC_003345.1 | + | 46658 | 0.69 | 0.619265 |
Target: 5'- cGCGGCGgGaag--CUCcAUCGGCUCAc -3' miRNA: 3'- -CGCCGCgCagguaGAGuUAGCCGAGU- -5' |
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12543 | 3' | -55.6 | NC_003345.1 | + | 39843 | 0.71 | 0.50392 |
Target: 5'- uUGGCGCGUCCAacCUCGAUgGG-UCGa -3' miRNA: 3'- cGCCGCGCAGGUa-GAGUUAgCCgAGU- -5' |
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12543 | 3' | -55.6 | NC_003345.1 | + | 2918 | 0.72 | 0.444927 |
Target: 5'- -aGG-GCGUCCuUCUCGcGUUGGCUCAu -3' miRNA: 3'- cgCCgCGCAGGuAGAGU-UAGCCGAGU- -5' |
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12543 | 3' | -55.6 | NC_003345.1 | + | 32384 | 1.1 | 0.001158 |
Target: 5'- gGCGGCGCGUCCAUCUCAAUCGGCUCAa -3' miRNA: 3'- -CGCCGCGCAGGUAGAGUUAGCCGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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