Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12544 | 5' | -56.2 | NC_003345.1 | + | 27551 | 0.67 | 0.682135 |
Target: 5'- uUUCgUCCACGUccauucGAGCGuGGUCggUCa -3' miRNA: 3'- -AAGgAGGUGCAu-----CUCGC-CCAGuuGGa -5' |
|||||||
12544 | 5' | -56.2 | NC_003345.1 | + | 55711 | 0.68 | 0.628281 |
Target: 5'- cUCgUCCGgcggugGUGGGGCGGGUgAACCc -3' miRNA: 3'- aAGgAGGUg-----CAUCUCGCCCAgUUGGa -5' |
|||||||
12544 | 5' | -56.2 | NC_003345.1 | + | 14655 | 0.68 | 0.617482 |
Target: 5'- gUUCCggugCgACGUGGAGCGuGUCGugCUu -3' miRNA: 3'- -AAGGa---GgUGCAUCUCGCcCAGUugGA- -5' |
|||||||
12544 | 5' | -56.2 | NC_003345.1 | + | 69306 | 0.68 | 0.617482 |
Target: 5'- gUUCCgcgaCCuguuCGUGGAGCaGGUUGACCa -3' miRNA: 3'- -AAGGa---GGu---GCAUCUCGcCCAGUUGGa -5' |
|||||||
12544 | 5' | -56.2 | NC_003345.1 | + | 12463 | 0.68 | 0.605617 |
Target: 5'- -aCCUCCACG-AGAGCGGaguuucggguaacGUCcuuGCCg -3' miRNA: 3'- aaGGAGGUGCaUCUCGCC-------------CAGu--UGGa -5' |
|||||||
12544 | 5' | -56.2 | NC_003345.1 | + | 74439 | 0.68 | 0.585193 |
Target: 5'- aUCCUCCGCaaGGAGguCGGGgCGGCCa -3' miRNA: 3'- aAGGAGGUGcaUCUC--GCCCaGUUGGa -5' |
|||||||
12544 | 5' | -56.2 | NC_003345.1 | + | 72864 | 0.69 | 0.525982 |
Target: 5'- -gUCUCUugGUAGAGCGGcGUCuguuucgugauugauAGCCg -3' miRNA: 3'- aaGGAGGugCAUCUCGCC-CAG---------------UUGGa -5' |
|||||||
12544 | 5' | -56.2 | NC_003345.1 | + | 35682 | 0.72 | 0.378944 |
Target: 5'- gUCCUCCACGgacguagcucggucGGGCGGcUCGGCCUg -3' miRNA: 3'- aAGGAGGUGCau------------CUCGCCcAGUUGGA- -5' |
|||||||
12544 | 5' | -56.2 | NC_003345.1 | + | 43111 | 0.72 | 0.36947 |
Target: 5'- -aCCUCCACGgGGAGCGGGaCAggaAUCUu -3' miRNA: 3'- aaGGAGGUGCaUCUCGCCCaGU---UGGA- -5' |
|||||||
12544 | 5' | -56.2 | NC_003345.1 | + | 33330 | 1.05 | 0.002199 |
Target: 5'- gUUCCUCCACGUAGAGCGGGUCAACCUu -3' miRNA: 3'- -AAGGAGGUGCAUCUCGCCCAGUUGGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home