miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12545 5' -56.5 NC_003345.1 + 34106 0.66 0.757555
Target:  5'- -gCUugAAGacuaCUCGUGGAcugacgGCACGCCGa -3'
miRNA:   3'- caGGugUUC----GAGCGCCU------UGUGCGGCa -5'
12545 5' -56.5 NC_003345.1 + 31810 0.66 0.756555
Target:  5'- -aCCACGAGUucuUCGCGGuguuuuccggugcGACuCGCUGUa -3'
miRNA:   3'- caGGUGUUCG---AGCGCC-------------UUGuGCGGCA- -5'
12545 5' -56.5 NC_003345.1 + 26420 0.66 0.731189
Target:  5'- cUCCACAAGUUCGCGcuugaaaccgaguacGAcuGgAUGCCGa -3'
miRNA:   3'- cAGGUGUUCGAGCGC---------------CU--UgUGCGGCa -5'
12545 5' -56.5 NC_003345.1 + 9656 0.66 0.727072
Target:  5'- -cCCACGAG-UCGcCGuGAACaACGCCGa -3'
miRNA:   3'- caGGUGUUCgAGC-GC-CUUG-UGCGGCa -5'
12545 5' -56.5 NC_003345.1 + 65071 0.67 0.674613
Target:  5'- cGUCCAgAAGCUCGgGGucgaugauaAUGUCGUg -3'
miRNA:   3'- -CAGGUgUUCGAGCgCCuug------UGCGGCA- -5'
12545 5' -56.5 NC_003345.1 + 61429 0.67 0.653292
Target:  5'- aGUCCAuCGAGaUUGCGGAGCGugUGCUGg -3'
miRNA:   3'- -CAGGU-GUUCgAGCGCCUUGU--GCGGCa -5'
12545 5' -56.5 NC_003345.1 + 52881 0.67 0.653292
Target:  5'- cGUCCAgAAGCUCGCGcc---UGCCGg -3'
miRNA:   3'- -CAGGUgUUCGAGCGCcuuguGCGGCa -5'
12545 5' -56.5 NC_003345.1 + 13779 0.68 0.631897
Target:  5'- -aCUACcAGCUCGCgucGGAACAC-CCGg -3'
miRNA:   3'- caGGUGuUCGAGCG---CCUUGUGcGGCa -5'
12545 5' -56.5 NC_003345.1 + 20281 0.68 0.610502
Target:  5'- cUCCACGAGUUCGuuGAACuucggaACGaCCGUa -3'
miRNA:   3'- cAGGUGUUCGAGCgcCUUG------UGC-GGCA- -5'
12545 5' -56.5 NC_003345.1 + 14313 0.69 0.567991
Target:  5'- cUCCGCGuacauCUCGCGGAGaACGUCGUu -3'
miRNA:   3'- cAGGUGUuc---GAGCGCCUUgUGCGGCA- -5'
12545 5' -56.5 NC_003345.1 + 69208 0.69 0.547
Target:  5'- cUCCACGaacAGgUCGCGGAACggGCGCUc- -3'
miRNA:   3'- cAGGUGU---UCgAGCGCCUUG--UGCGGca -5'
12545 5' -56.5 NC_003345.1 + 35944 0.69 0.536596
Target:  5'- aGUCCgGCAucgucuuuAGCUCGUGGAuagcgagcugACACGCCc- -3'
miRNA:   3'- -CAGG-UGU--------UCGAGCGCCU----------UGUGCGGca -5'
12545 5' -56.5 NC_003345.1 + 14490 0.69 0.526262
Target:  5'- -cCCACGAGCgcCGUGGAACGCuCCa- -3'
miRNA:   3'- caGGUGUUCGa-GCGCCUUGUGcGGca -5'
12545 5' -56.5 NC_003345.1 + 69305 0.7 0.516003
Target:  5'- uUCCGCGAccuGUUCGUGGAGCAgGuuGa -3'
miRNA:   3'- cAGGUGUU---CGAGCGCCUUGUgCggCa -5'
12545 5' -56.5 NC_003345.1 + 46714 0.7 0.466037
Target:  5'- -cCCACuu-CUCGCGGAGCGugacucgcuCGCCGUa -3'
miRNA:   3'- caGGUGuucGAGCGCCUUGU---------GCGGCA- -5'
12545 5' -56.5 NC_003345.1 + 58919 0.71 0.427933
Target:  5'- cGUUCAgAcGCUUGCGGAACACGaCGg -3'
miRNA:   3'- -CAGGUgUuCGAGCGCCUUGUGCgGCa -5'
12545 5' -56.5 NC_003345.1 + 14584 0.71 0.418697
Target:  5'- uUCCACGGcGCUCGUGGGuCGCcaGCCGa -3'
miRNA:   3'- cAGGUGUU-CGAGCGCCUuGUG--CGGCa -5'
12545 5' -56.5 NC_003345.1 + 75738 0.72 0.374396
Target:  5'- -aCCGCGAGCgCGaCGGAACAgcuCGCCGc -3'
miRNA:   3'- caGGUGUUCGaGC-GCCUUGU---GCGGCa -5'
12545 5' -56.5 NC_003345.1 + 33355 0.74 0.281659
Target:  5'- uUCCGCGAGCUUGUGGAcgaaGCACuCCGc -3'
miRNA:   3'- cAGGUGUUCGAGCGCCU----UGUGcGGCa -5'
12545 5' -56.5 NC_003345.1 + 33450 1.07 0.00161
Target:  5'- cGUCCACAAGCUCGCGGAACACGCCGUc -3'
miRNA:   3'- -CAGGUGUUCGAGCGCCUUGUGCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.