miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12546 3' -46.4 NC_003345.1 + 32219 0.66 0.998755
Target:  5'- aUCGAccUCGGUAUCaaAACCGGCGu- -3'
miRNA:   3'- gAGCUaaAGUUAUAGc-UUGGCCGUgc -5'
12546 3' -46.4 NC_003345.1 + 67058 0.66 0.998755
Target:  5'- cCUCGAaUccagacuucUCGuaGUCGAACCGGCucuCGc -3'
miRNA:   3'- -GAGCUaA---------AGUuaUAGCUUGGCCGu--GC- -5'
12546 3' -46.4 NC_003345.1 + 12406 0.66 0.998755
Target:  5'- aUCGAgg-UAAUGUCcAAUUGGCACa -3'
miRNA:   3'- gAGCUaaaGUUAUAGcUUGGCCGUGc -5'
12546 3' -46.4 NC_003345.1 + 20015 0.66 0.998443
Target:  5'- gCUCGAUUUgAAccUCGAACCcggagucGGUGCGc -3'
miRNA:   3'- -GAGCUAAAgUUauAGCUUGG-------CCGUGC- -5'
12546 3' -46.4 NC_003345.1 + 28682 0.67 0.997751
Target:  5'- cCUCGGcUUCuAUGUC-AACCGGCuuCGa -3'
miRNA:   3'- -GAGCUaAAGuUAUAGcUUGGCCGu-GC- -5'
12546 3' -46.4 NC_003345.1 + 26524 0.67 0.997293
Target:  5'- aCUCGGUUUCAAgcgCGAACUuguGGaGCGc -3'
miRNA:   3'- -GAGCUAAAGUUauaGCUUGG---CCgUGC- -5'
12546 3' -46.4 NC_003345.1 + 32509 0.67 0.99709
Target:  5'- aCUCGAUaagcucagcaagcUCAAcuUCGAGCCGGacgaGCGg -3'
miRNA:   3'- -GAGCUAa------------AGUUauAGCUUGGCCg---UGC- -5'
12546 3' -46.4 NC_003345.1 + 22035 0.67 0.996145
Target:  5'- aCUCGG--UCAGUA-CGAGCCaGCuACGg -3'
miRNA:   3'- -GAGCUaaAGUUAUaGCUUGGcCG-UGC- -5'
12546 3' -46.4 NC_003345.1 + 1456 0.67 0.996145
Target:  5'- cCUCGAag-C--UGUCGAACCGGCuguccuuaGCGa -3'
miRNA:   3'- -GAGCUaaaGuuAUAGCUUGGCCG--------UGC- -5'
12546 3' -46.4 NC_003345.1 + 67841 0.69 0.987002
Target:  5'- aCUCGAUgugUUAgaacAUAUcCGAACCGGaaCACGg -3'
miRNA:   3'- -GAGCUAa--AGU----UAUA-GCUUGGCC--GUGC- -5'
12546 3' -46.4 NC_003345.1 + 32418 0.69 0.984582
Target:  5'- gUCGuccgucUCAAUGUCGAACgucagaacacggggCGGCGCGu -3'
miRNA:   3'- gAGCuaa---AGUUAUAGCUUG--------------GCCGUGC- -5'
12546 3' -46.4 NC_003345.1 + 33872 1.11 0.010235
Target:  5'- uCUCGAUUUCAAUAUCGAACCGGCACGg -3'
miRNA:   3'- -GAGCUAAAGUUAUAGCUUGGCCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.