miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12546 5' -59.2 NC_003345.1 + 52414 0.66 0.643175
Target:  5'- cGGCGUCagcaaccugcccgUCGUugUCGGgGucgauugcguucGUGAGGUCa -3'
miRNA:   3'- -CCGUAG-------------GGCAugAGCCgC------------CGCUCCAG- -5'
12546 5' -59.2 NC_003345.1 + 43315 0.67 0.58192
Target:  5'- cGGUAUCuCCGUGa--GGaacaCGGCGAcGGUCg -3'
miRNA:   3'- -CCGUAG-GGCAUgagCC----GCCGCU-CCAG- -5'
12546 5' -59.2 NC_003345.1 + 58489 0.67 0.551172
Target:  5'- -uCGUCCUGUuguaaucaaGCUCGGCGGaGAGGc- -3'
miRNA:   3'- ccGUAGGGCA---------UGAGCCGCCgCUCCag -5'
12546 5' -59.2 NC_003345.1 + 17849 0.68 0.520938
Target:  5'- cGGUcUUCCGUGgaCGGCauuaGGuCGGGGUCg -3'
miRNA:   3'- -CCGuAGGGCAUgaGCCG----CC-GCUCCAG- -5'
12546 5' -59.2 NC_003345.1 + 24572 0.68 0.511001
Target:  5'- aGCGg-UCGUcCUCGGCGGCaggacgccggGAGGUCg -3'
miRNA:   3'- cCGUagGGCAuGAGCCGCCG----------CUCCAG- -5'
12546 5' -59.2 NC_003345.1 + 70948 0.68 0.511001
Target:  5'- cGCAcCCCGUACUCGuuGaacccauCGAGGUCa -3'
miRNA:   3'- cCGUaGGGCAUGAGCcgCc------GCUCCAG- -5'
12546 5' -59.2 NC_003345.1 + 50131 0.68 0.511001
Target:  5'- aGGC-UCCgGcgGCUcCGGCGGUgGAGGUg -3'
miRNA:   3'- -CCGuAGGgCa-UGA-GCCGCCG-CUCCAg -5'
12546 5' -59.2 NC_003345.1 + 2342 0.69 0.425683
Target:  5'- uGGCGg--UGUAgUCGGUGGCGAGGa- -3'
miRNA:   3'- -CCGUaggGCAUgAGCCGCCGCUCCag -5'
12546 5' -59.2 NC_003345.1 + 4047 0.7 0.402645
Target:  5'- aGGUAUCCUuUGCgUCGGuCGGCucucucggcucguucGAGGUCa -3'
miRNA:   3'- -CCGUAGGGcAUG-AGCC-GCCG---------------CUCCAG- -5'
12546 5' -59.2 NC_003345.1 + 14931 0.71 0.357406
Target:  5'- -cCGUCaCCGUACUCGuuCGGCG-GGUCg -3'
miRNA:   3'- ccGUAG-GGCAUGAGCc-GCCGCuCCAG- -5'
12546 5' -59.2 NC_003345.1 + 54324 0.71 0.318804
Target:  5'- uGCggCCCGcuCUCGG-GGCGAGGUUa -3'
miRNA:   3'- cCGuaGGGCauGAGCCgCCGCUCCAG- -5'
12546 5' -59.2 NC_003345.1 + 35187 0.73 0.251213
Target:  5'- cGGC-UCCCGUGaagucCUCGGCGGgGccGUCg -3'
miRNA:   3'- -CCGuAGGGCAU-----GAGCCGCCgCucCAG- -5'
12546 5' -59.2 NC_003345.1 + 61158 0.76 0.163761
Target:  5'- cGGCAcaCCCGaGCgUCGGCGGCGGuaauGGUCg -3'
miRNA:   3'- -CCGUa-GGGCaUG-AGCCGCCGCU----CCAG- -5'
12546 5' -59.2 NC_003345.1 + 33838 1.12 0.000444
Target:  5'- cGGCAUCCCGUACUCGGCGGCGAGGUCa -3'
miRNA:   3'- -CCGUAGGGCAUGAGCCGCCGCUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.