miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12547 5' -57.4 NC_003345.1 + 64630 0.66 0.690087
Target:  5'- uCGUCACCUuucucGGCCuguuccGGUucauCGGGCGGCu -3'
miRNA:   3'- -GCAGUGGAc----UCGGua----UCG----GCUCGCCG- -5'
12547 5' -57.4 NC_003345.1 + 27845 0.66 0.679604
Target:  5'- aGUUGCUUGcgaGGUugaCGUAGCCGAGuCGGUc -3'
miRNA:   3'- gCAGUGGAC---UCG---GUAUCGGCUC-GCCG- -5'
12547 5' -57.4 NC_003345.1 + 15636 0.67 0.647941
Target:  5'- -aUCACCaaaagaaaaUGAagGaaGUAGCUGAGCGGCg -3'
miRNA:   3'- gcAGUGG---------ACU--CggUAUCGGCUCGCCG- -5'
12547 5' -57.4 NC_003345.1 + 50477 0.68 0.595016
Target:  5'- -cUCACCUGcGUCGUGGCCucccuGAGCGccGCu -3'
miRNA:   3'- gcAGUGGACuCGGUAUCGG-----CUCGC--CG- -5'
12547 5' -57.4 NC_003345.1 + 42208 0.68 0.573993
Target:  5'- cCGUCGCUUuGGCgAguaggAGCCGAGCGagaaGCg -3'
miRNA:   3'- -GCAGUGGAcUCGgUa----UCGGCUCGC----CG- -5'
12547 5' -57.4 NC_003345.1 + 63437 0.68 0.55211
Target:  5'- -cUCGCCUcuaacacGGGCaCGcUGGCCGAGgGGCc -3'
miRNA:   3'- gcAGUGGA-------CUCG-GU-AUCGGCUCgCCG- -5'
12547 5' -57.4 NC_003345.1 + 19749 0.68 0.542806
Target:  5'- aCGcUACCuUGAGCCGc-GCC-AGCGGCg -3'
miRNA:   3'- -GCaGUGG-ACUCGGUauCGGcUCGCCG- -5'
12547 5' -57.4 NC_003345.1 + 50310 0.69 0.492194
Target:  5'- uCGUCACCaccGCCAUcuCCGccAGCGGCu -3'
miRNA:   3'- -GCAGUGGacuCGGUAucGGC--UCGCCG- -5'
12547 5' -57.4 NC_003345.1 + 73601 0.7 0.443867
Target:  5'- uCGUacCGCCUGAgGCCGUaggaguAGUCGucAGCGGCu -3'
miRNA:   3'- -GCA--GUGGACU-CGGUA------UCGGC--UCGCCG- -5'
12547 5' -57.4 NC_003345.1 + 46505 0.7 0.431742
Target:  5'- aGUU-CCUGAGCgacaagcuggaggaCGUAGCC-AGCGGCg -3'
miRNA:   3'- gCAGuGGACUCG--------------GUAUCGGcUCGCCG- -5'
12547 5' -57.4 NC_003345.1 + 54256 0.71 0.398323
Target:  5'- uGUCACCccgaUGAguGCCGUcaguaGGCCGAG-GGCa -3'
miRNA:   3'- gCAGUGG----ACU--CGGUA-----UCGGCUCgCCG- -5'
12547 5' -57.4 NC_003345.1 + 21827 0.71 0.398323
Target:  5'- uCGUCACCgccgGAGUCGccaCCGAGCGaGCc -3'
miRNA:   3'- -GCAGUGGa---CUCGGUaucGGCUCGC-CG- -5'
12547 5' -57.4 NC_003345.1 + 72310 0.72 0.372475
Target:  5'- uCGUCGUCgGGGCCAccGCCGcccGGCGGCu -3'
miRNA:   3'- -GCAGUGGaCUCGGUauCGGC---UCGCCG- -5'
12547 5' -57.4 NC_003345.1 + 72426 0.73 0.302007
Target:  5'- aCG-CGCUgGAGCC---GCCGGGCGGCg -3'
miRNA:   3'- -GCaGUGGaCUCGGuauCGGCUCGCCG- -5'
12547 5' -57.4 NC_003345.1 + 29708 0.76 0.208155
Target:  5'- gGUCGCCUGAaUCAUGGCgaGAGgGGCg -3'
miRNA:   3'- gCAGUGGACUcGGUAUCGg-CUCgCCG- -5'
12547 5' -57.4 NC_003345.1 + 35031 1.11 0.000673
Target:  5'- gCGUCACCUGAGCCAUAGCCGAGCGGCu -3'
miRNA:   3'- -GCAGUGGACUCGGUAUCGGCUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.