Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12548 | 3' | -51.1 | NC_003345.1 | + | 35226 | 1.12 | 0.002593 |
Target: 5'- aCAGCUCCACCGAGUUAACGAAGUGCCc -3' miRNA: 3'- -GUCGAGGUGGCUCAAUUGCUUCACGG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 69614 | 0.74 | 0.575925 |
Target: 5'- aGGCUUCAUCGAGccGACGAcccaucGUGCCg -3' miRNA: 3'- gUCGAGGUGGCUCaaUUGCUu-----CACGG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 48289 | 0.74 | 0.597874 |
Target: 5'- uGGCUCCACCaacGAGcggAAUGGAGuUGCCc -3' miRNA: 3'- gUCGAGGUGG---CUCaa-UUGCUUC-ACGG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 38715 | 0.74 | 0.608896 |
Target: 5'- --aCUCUGCuCGGGUUccgggcGACGAAGUGCCg -3' miRNA: 3'- gucGAGGUG-GCUCAA------UUGCUUCACGG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 23794 | 0.73 | 0.630993 |
Target: 5'- gAGCUUCACCGAGagguGCGAAGaaUGaCCa -3' miRNA: 3'- gUCGAGGUGGCUCaau-UGCUUC--AC-GG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 22221 | 0.73 | 0.648677 |
Target: 5'- cCAGCUCCucgaugacuuccuCCGGGUcgucAACGggGUcGCCg -3' miRNA: 3'- -GUCGAGGu------------GGCUCAa---UUGCuuCA-CGG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 59354 | 0.72 | 0.675116 |
Target: 5'- uCGGCUUCAUCGccuuGUaAGCGAGGUaGCCa -3' miRNA: 3'- -GUCGAGGUGGCu---CAaUUGCUUCA-CGG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 21251 | 0.72 | 0.707813 |
Target: 5'- -cGCUCCgACCGAagacguggggGUUGACGAAGUuCCc -3' miRNA: 3'- guCGAGG-UGGCU----------CAAUUGCUUCAcGG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 65525 | 0.71 | 0.750308 |
Target: 5'- -cGCUUCACCGAGguaaucaccAGCGGAGUcGUCg -3' miRNA: 3'- guCGAGGUGGCUCaa-------UUGCUUCA-CGG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 52044 | 0.71 | 0.769858 |
Target: 5'- uCGGCUCUaccguuuGCCGAGUcguggcUAAugccCGAAGUGCUa -3' miRNA: 3'- -GUCGAGG-------UGGCUCA------AUU----GCUUCACGG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 8669 | 0.7 | 0.790862 |
Target: 5'- aCGGUcacaUCUGCCGAGUgauUGACGAGGaGCUg -3' miRNA: 3'- -GUCG----AGGUGGCUCA---AUUGCUUCaCGG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 14246 | 0.7 | 0.798676 |
Target: 5'- -cGUUCCACCGGGgguuguccaugAACGucGUGUCg -3' miRNA: 3'- guCGAGGUGGCUCaa---------UUGCuuCACGG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 75721 | 0.7 | 0.819567 |
Target: 5'- aCAGCU-CGCCGcAGUUGcgGCGGAG-GCUg -3' miRNA: 3'- -GUCGAgGUGGC-UCAAU--UGCUUCaCGG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 14748 | 0.69 | 0.855016 |
Target: 5'- gGGCUUCAUCGAgcgGUUGuACGAGGaUGCUc -3' miRNA: 3'- gUCGAGGUGGCU---CAAU-UGCUUC-ACGG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 14496 | 0.69 | 0.855016 |
Target: 5'- gUAGCUCaggauaGCCGAG--AACGAgAGUGUCu -3' miRNA: 3'- -GUCGAGg-----UGGCUCaaUUGCU-UCACGG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 73418 | 0.69 | 0.863312 |
Target: 5'- uCAGCcaccgCCGCCGGGUUcugccgacucGAUGGAGUGauaCCg -3' miRNA: 3'- -GUCGa----GGUGGCUCAA----------UUGCUUCAC---GG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 48732 | 0.68 | 0.879166 |
Target: 5'- -cGUUCCACCGAGau-ACGA--UGCUg -3' miRNA: 3'- guCGAGGUGGCUCaauUGCUucACGG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 33049 | 0.68 | 0.886711 |
Target: 5'- aAGCUCCacACCGAGggcuACGccGgGCCg -3' miRNA: 3'- gUCGAGG--UGGCUCaau-UGCuuCaCGG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 29237 | 0.68 | 0.908413 |
Target: 5'- uCAGCcccgaCCACCacgacggagagacguGGgcGACGAAGUGCCa -3' miRNA: 3'- -GUCGa----GGUGGc--------------UCaaUUGCUUCACGG- -5' |
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12548 | 3' | -51.1 | NC_003345.1 | + | 6204 | 0.67 | 0.914223 |
Target: 5'- aGGgUCaCAUCGAGgggaUGGCGAAGUauGCCu -3' miRNA: 3'- gUCgAG-GUGGCUCa---AUUGCUUCA--CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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