miRNA display CGI


Results 21 - 30 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12548 3' -51.1 NC_003345.1 + 52044 0.71 0.769858
Target:  5'- uCGGCUCUaccguuuGCCGAGUcguggcUAAugccCGAAGUGCUa -3'
miRNA:   3'- -GUCGAGG-------UGGCUCA------AUU----GCUUCACGG- -5'
12548 3' -51.1 NC_003345.1 + 65525 0.71 0.750308
Target:  5'- -cGCUUCACCGAGguaaucaccAGCGGAGUcGUCg -3'
miRNA:   3'- guCGAGGUGGCUCaa-------UUGCUUCA-CGG- -5'
12548 3' -51.1 NC_003345.1 + 21251 0.72 0.707813
Target:  5'- -cGCUCCgACCGAagacguggggGUUGACGAAGUuCCc -3'
miRNA:   3'- guCGAGG-UGGCU----------CAAUUGCUUCAcGG- -5'
12548 3' -51.1 NC_003345.1 + 59354 0.72 0.675116
Target:  5'- uCGGCUUCAUCGccuuGUaAGCGAGGUaGCCa -3'
miRNA:   3'- -GUCGAGGUGGCu---CAaUUGCUUCA-CGG- -5'
12548 3' -51.1 NC_003345.1 + 22221 0.73 0.648677
Target:  5'- cCAGCUCCucgaugacuuccuCCGGGUcgucAACGggGUcGCCg -3'
miRNA:   3'- -GUCGAGGu------------GGCUCAa---UUGCuuCA-CGG- -5'
12548 3' -51.1 NC_003345.1 + 23794 0.73 0.630993
Target:  5'- gAGCUUCACCGAGagguGCGAAGaaUGaCCa -3'
miRNA:   3'- gUCGAGGUGGCUCaau-UGCUUC--AC-GG- -5'
12548 3' -51.1 NC_003345.1 + 38715 0.74 0.608896
Target:  5'- --aCUCUGCuCGGGUUccgggcGACGAAGUGCCg -3'
miRNA:   3'- gucGAGGUG-GCUCAA------UUGCUUCACGG- -5'
12548 3' -51.1 NC_003345.1 + 48289 0.74 0.597874
Target:  5'- uGGCUCCACCaacGAGcggAAUGGAGuUGCCc -3'
miRNA:   3'- gUCGAGGUGG---CUCaa-UUGCUUC-ACGG- -5'
12548 3' -51.1 NC_003345.1 + 69614 0.74 0.575925
Target:  5'- aGGCUUCAUCGAGccGACGAcccaucGUGCCg -3'
miRNA:   3'- gUCGAGGUGGCUCaaUUGCUu-----CACGG- -5'
12548 3' -51.1 NC_003345.1 + 35226 1.12 0.002593
Target:  5'- aCAGCUCCACCGAGUUAACGAAGUGCCc -3'
miRNA:   3'- -GUCGAGGUGGCUCAAUUGCUUCACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.