miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1255 3' -49.2 NC_001317.1 + 13245 0.67 0.841433
Target:  5'- --aUCgAGGGggcgcgAUGGGGCGGUuuguugaGCGACUg -3'
miRNA:   3'- gaaAG-UCCCa-----UACCUUGCCG-------UGUUGG- -5'
1255 3' -49.2 NC_001317.1 + 2224 0.67 0.842381
Target:  5'- aUUUCAGGcGUGUaacGGAugcCGcGUGCGGCCg -3'
miRNA:   3'- gAAAGUCC-CAUA---CCUu--GC-CGUGUUGG- -5'
1255 3' -49.2 NC_001317.1 + 17596 0.69 0.701997
Target:  5'- ---gCAGGcGgcUGaGAAUGGCGCGGCUa -3'
miRNA:   3'- gaaaGUCC-CauAC-CUUGCCGUGUUGG- -5'
1255 3' -49.2 NC_001317.1 + 14134 0.7 0.678393
Target:  5'- --gUCAGGGc-UGGAugaugucUGGCACAACUa -3'
miRNA:   3'- gaaAGUCCCauACCUu------GCCGUGUUGG- -5'
1255 3' -49.2 NC_001317.1 + 30053 0.72 0.571131
Target:  5'- aUUUCAGGGUAauuuuagcgguUGGGAUGGCucuUAucGCCc -3'
miRNA:   3'- gAAAGUCCCAU-----------ACCUUGCCGu--GU--UGG- -5'
1255 3' -49.2 NC_001317.1 + 8839 0.74 0.425784
Target:  5'- --aUCGGGGUuauuucGGAgcuGCGGCACGGCg -3'
miRNA:   3'- gaaAGUCCCAua----CCU---UGCCGUGUUGg -5'
1255 3' -49.2 NC_001317.1 + 1489 1.12 0.001268
Target:  5'- gCUUUCAGGGUAUGGAACGGCACAACCc -3'
miRNA:   3'- -GAAAGUCCCAUACCUUGCCGUGUUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.