miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1255 5' -52.3 NC_001317.1 + 10351 0.66 0.771705
Target:  5'- aCC-ACCGUgACCGUggUCGUCGAgcugcacACCGu -3'
miRNA:   3'- -GGcUGGCAgUGGCG--AGUAGUUa------UGGC- -5'
1255 5' -52.3 NC_001317.1 + 17795 0.66 0.771705
Target:  5'- uUGACCGgcUCACCGCUgCGUUuaaaGCCu -3'
miRNA:   3'- gGCUGGC--AGUGGCGA-GUAGuua-UGGc -5'
1255 5' -52.3 NC_001317.1 + 19978 0.66 0.771705
Target:  5'- aCGAUgGUgACCG-UCAUCAGUuugcuauuGCCGa -3'
miRNA:   3'- gGCUGgCAgUGGCgAGUAGUUA--------UGGC- -5'
1255 5' -52.3 NC_001317.1 + 19973 0.66 0.761062
Target:  5'- gCUGGCCGUCAUCGCac-----UACCGg -3'
miRNA:   3'- -GGCUGGCAGUGGCGaguaguuAUGGC- -5'
1255 5' -52.3 NC_001317.1 + 17064 0.66 0.739355
Target:  5'- cCCGGCCaUCGuuCCGUgUcgCGAUACCGa -3'
miRNA:   3'- -GGCUGGcAGU--GGCGaGuaGUUAUGGC- -5'
1255 5' -52.3 NC_001317.1 + 15839 0.67 0.717174
Target:  5'- gUCGACCGUCuggaacagcaccGCCGCgcaAUCGGgcUGCUGu -3'
miRNA:   3'- -GGCUGGCAG------------UGGCGag-UAGUU--AUGGC- -5'
1255 5' -52.3 NC_001317.1 + 9192 0.67 0.67181
Target:  5'- aCCGGgCGcuUCACCaGCUCAggCAGUGgCGg -3'
miRNA:   3'- -GGCUgGC--AGUGG-CGAGUa-GUUAUgGC- -5'
1255 5' -52.3 NC_001317.1 + 14388 0.68 0.660334
Target:  5'- gCCGACCagucaaagccuGUCACCGUugUCGUgCGcguUGCCGa -3'
miRNA:   3'- -GGCUGG-----------CAGUGGCG--AGUA-GUu--AUGGC- -5'
1255 5' -52.3 NC_001317.1 + 4553 0.68 0.660334
Target:  5'- aCGGCgGUCACCGCUuCAU--GUACa- -3'
miRNA:   3'- gGCUGgCAGUGGCGA-GUAguUAUGgc -5'
1255 5' -52.3 NC_001317.1 + 2833 0.68 0.625784
Target:  5'- gCCGACCG-CAUCGaaauugaCAUCAGUcACCGc -3'
miRNA:   3'- -GGCUGGCaGUGGCga-----GUAGUUA-UGGC- -5'
1255 5' -52.3 NC_001317.1 + 10114 0.68 0.63731
Target:  5'- uCUGACCGUCAgugcacuggucuCCgGCUCGuacUCAAUgACCGc -3'
miRNA:   3'- -GGCUGGCAGU------------GG-CGAGU---AGUUA-UGGC- -5'
1255 5' -52.3 NC_001317.1 + 23773 0.69 0.579849
Target:  5'- --uACCG-CACCGCUCGcCAGUucACCGa -3'
miRNA:   3'- ggcUGGCaGUGGCGAGUaGUUA--UGGC- -5'
1255 5' -52.3 NC_001317.1 + 14381 0.69 0.591286
Target:  5'- aCCGGCUuUCGCaauggCGCUCugcacauugguaAUCAGUACCGg -3'
miRNA:   3'- -GGCUGGcAGUG-----GCGAG------------UAGUUAUGGC- -5'
1255 5' -52.3 NC_001317.1 + 6144 0.71 0.480074
Target:  5'- aUGACCGUCauGCUGUggCGUCucGAUGCCGg -3'
miRNA:   3'- gGCUGGCAG--UGGCGa-GUAG--UUAUGGC- -5'
1255 5' -52.3 NC_001317.1 + 13190 0.72 0.389424
Target:  5'- aCCGccGCCGUCAUCGC-CAUUAcugaugcgaAUACCGu -3'
miRNA:   3'- -GGC--UGGCAGUGGCGaGUAGU---------UAUGGC- -5'
1255 5' -52.3 NC_001317.1 + 2290 0.73 0.361793
Target:  5'- -aGGCCGagGCCGguugCGUCAAUGCCGa -3'
miRNA:   3'- ggCUGGCagUGGCga--GUAGUUAUGGC- -5'
1255 5' -52.3 NC_001317.1 + 1455 1.13 0.000664
Target:  5'- aCCGACCGUCACCGCUCAUCAAUACCGg -3'
miRNA:   3'- -GGCUGGCAGUGGCGAGUAGUUAUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.