miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12550 3' -55.7 NC_003345.1 + 57285 0.66 0.810479
Target:  5'- -cUUCACUcuGUCCGGgugUAGguGUCCGUCc -3'
miRNA:   3'- gcAGGUGG--CAGGCC---AUCuuCAGGCAG- -5'
12550 3' -55.7 NC_003345.1 + 27297 0.66 0.810479
Target:  5'- gGUCgaAUCGUCCGGUcGcAAGUUCGUg -3'
miRNA:   3'- gCAGg-UGGCAGGCCAuC-UUCAGGCAg -5'
12550 3' -55.7 NC_003345.1 + 36639 0.66 0.791995
Target:  5'- aCGUCCACCGUgggaGGccaauuGAAGUCuuCGUCg -3'
miRNA:   3'- -GCAGGUGGCAgg--CCau----CUUCAG--GCAG- -5'
12550 3' -55.7 NC_003345.1 + 45789 0.66 0.782517
Target:  5'- -cUCCAgCGUCCGaaGGAAGUagUCGUCa -3'
miRNA:   3'- gcAGGUgGCAGGCcaUCUUCA--GGCAG- -5'
12550 3' -55.7 NC_003345.1 + 56689 0.67 0.772894
Target:  5'- cCGUCagaaccagaACCGUCCGaaGUAGAAccaCCGUCa -3'
miRNA:   3'- -GCAGg--------UGGCAGGC--CAUCUUca-GGCAG- -5'
12550 3' -55.7 NC_003345.1 + 17941 0.67 0.753255
Target:  5'- cCGUCCACgGaagaCCGGcgAGAAGgcUCCGUg -3'
miRNA:   3'- -GCAGGUGgCa---GGCCa-UCUUC--AGGCAg -5'
12550 3' -55.7 NC_003345.1 + 35643 0.67 0.753255
Target:  5'- uCGUCCaccacgACCGUcCCGGUcgcGGAaggaaucuugAGUUCGUCu -3'
miRNA:   3'- -GCAGG------UGGCA-GGCCA---UCU----------UCAGGCAG- -5'
12550 3' -55.7 NC_003345.1 + 23077 0.67 0.733159
Target:  5'- aCGUcCCACCGUUCGGg------CCGUCg -3'
miRNA:   3'- -GCA-GGUGGCAGGCCaucuucaGGCAG- -5'
12550 3' -55.7 NC_003345.1 + 323 0.68 0.681455
Target:  5'- cCGUCCGuCUcUCCGGUucc-GUCCGUCu -3'
miRNA:   3'- -GCAGGU-GGcAGGCCAucuuCAGGCAG- -5'
12550 3' -55.7 NC_003345.1 + 29475 0.7 0.593774
Target:  5'- gCGUCCACuuugucgucgauuuCGUCCGGUGGGuagauugucAG-CCGUUg -3'
miRNA:   3'- -GCAGGUG--------------GCAGGCCAUCU---------UCaGGCAG- -5'
12550 3' -55.7 NC_003345.1 + 30345 0.71 0.514092
Target:  5'- cCGaCCACCGagggagauUCCGGUGGA-GUUCGUUg -3'
miRNA:   3'- -GCaGGUGGC--------AGGCCAUCUuCAGGCAG- -5'
12550 3' -55.7 NC_003345.1 + 23185 0.73 0.400051
Target:  5'- gCG-CCACCGaCCGGcAGAAGUCCaacaGUCg -3'
miRNA:   3'- -GCaGGUGGCaGGCCaUCUUCAGG----CAG- -5'
12550 3' -55.7 NC_003345.1 + 36573 1.1 0.001522
Target:  5'- cCGUCCACCGUCCGGUAGAAGUCCGUCu -3'
miRNA:   3'- -GCAGGUGGCAGGCCAUCUUCAGGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.