miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12551 5' -55.6 NC_003345.1 + 21755 0.67 0.739311
Target:  5'- --cGUcGUC-GUCGCCGCCCGAguuggcgauagugauACCg -3'
miRNA:   3'- caaCAcCAGuCAGUGGCGGGCU---------------UGGa -5'
12551 5' -55.6 NC_003345.1 + 54964 0.67 0.735203
Target:  5'- ----gGGUCacucguagAGUCACCGaCCCGAACg- -3'
miRNA:   3'- caacaCCAG--------UCAGUGGC-GGGCUUGga -5'
12551 5' -55.6 NC_003345.1 + 35808 0.67 0.735203
Target:  5'- aUUGUGGaugaaCAGgccgaGCCGCCCGA-CCg -3'
miRNA:   3'- cAACACCa----GUCag---UGGCGGGCUuGGa -5'
12551 5' -55.6 NC_003345.1 + 27530 0.68 0.639887
Target:  5'- --cGUGGUCGGUCACUuCCuCGcaAACCg -3'
miRNA:   3'- caaCACCAGUCAGUGGcGG-GC--UUGGa -5'
12551 5' -55.6 NC_003345.1 + 29235 0.69 0.618377
Target:  5'- cUUGUGGUCAGUUAucUCGUCCuucggcuucguaGAGCCa -3'
miRNA:   3'- cAACACCAGUCAGU--GGCGGG------------CUUGGa -5'
12551 5' -55.6 NC_003345.1 + 37193 0.69 0.607635
Target:  5'- --cGUGGUCGGUU-CCGCuCCGAcuguuggaGCCa -3'
miRNA:   3'- caaCACCAGUCAGuGGCG-GGCU--------UGGa -5'
12551 5' -55.6 NC_003345.1 + 19061 0.69 0.607635
Target:  5'- --gGUGuagaaGUCAGUCACCGCuuCCGggUCg -3'
miRNA:   3'- caaCAC-----CAGUCAGUGGCG--GGCuuGGa -5'
12551 5' -55.6 NC_003345.1 + 59339 0.69 0.596913
Target:  5'- cGUUGaugGGUCGGUUgACgGCCCGA-CCg -3'
miRNA:   3'- -CAACa--CCAGUCAG-UGgCGGGCUuGGa -5'
12551 5' -55.6 NC_003345.1 + 53028 0.72 0.43397
Target:  5'- --aGUGGUCGcGUCcuucaccggagcGCCGCCUGAGCUg -3'
miRNA:   3'- caaCACCAGU-CAG------------UGGCGGGCUUGGa -5'
12551 5' -55.6 NC_003345.1 + 36720 1.07 0.001844
Target:  5'- cGUUGUGGUCAGUCACCGCCCGAACCUu -3'
miRNA:   3'- -CAACACCAGUCAGUGGCGGGCUUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.