miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12552 5' -53.6 NC_003345.1 + 70935 0.66 0.899485
Target:  5'- uCCGuAUCACGGACaCCUUCuugcgaaaGGUCGCu -3'
miRNA:   3'- -GGC-UGGUGCUUG-GGAAGuag-----UCGGUG- -5'
12552 5' -53.6 NC_003345.1 + 31695 0.66 0.899485
Target:  5'- gCGACCAUaucACCgUUCAggaaAGCCGCc -3'
miRNA:   3'- gGCUGGUGcu-UGGgAAGUag--UCGGUG- -5'
12552 5' -53.6 NC_003345.1 + 34241 0.66 0.898805
Target:  5'- -aGGCCgcucgggGCGAagcGCCCUUCggcgugccGUCAGuCCACg -3'
miRNA:   3'- ggCUGG-------UGCU---UGGGAAG--------UAGUC-GGUG- -5'
12552 5' -53.6 NC_003345.1 + 50388 0.66 0.892565
Target:  5'- cCCGAa-ACGAGCCaguCUUCG--AGCCACa -3'
miRNA:   3'- -GGCUggUGCUUGG---GAAGUagUCGGUG- -5'
12552 5' -53.6 NC_003345.1 + 72352 0.66 0.877965
Target:  5'- uUGGuuACGAACCCguacUCGUCGGUCu- -3'
miRNA:   3'- gGCUggUGCUUGGGa---AGUAGUCGGug -5'
12552 5' -53.6 NC_003345.1 + 45252 0.66 0.877965
Target:  5'- uUCGuCCACGAccuCCCUcuccUCGUCGGUUAa -3'
miRNA:   3'- -GGCuGGUGCUu--GGGA----AGUAGUCGGUg -5'
12552 5' -53.6 NC_003345.1 + 4755 0.66 0.873392
Target:  5'- cCCGAcuuCCACGAcCCCgagaugaacgacgCAUCgAGCUACg -3'
miRNA:   3'- -GGCU---GGUGCUuGGGaa-----------GUAG-UCGGUG- -5'
12552 5' -53.6 NC_003345.1 + 59626 0.67 0.854245
Target:  5'- aCCGA-CGCGAgcGCCCgguaCAUCGGCUg- -3'
miRNA:   3'- -GGCUgGUGCU--UGGGaa--GUAGUCGGug -5'
12552 5' -53.6 NC_003345.1 + 40219 0.67 0.854245
Target:  5'- aCGAUUggGAACCCgaccUCGaacUCAGCCAg -3'
miRNA:   3'- gGCUGGugCUUGGGa---AGU---AGUCGGUg -5'
12552 5' -53.6 NC_003345.1 + 46797 0.67 0.845879
Target:  5'- aCGACCGC--GCCCUcgccgUCGUCAaaggcGUCACg -3'
miRNA:   3'- gGCUGGUGcuUGGGA-----AGUAGU-----CGGUG- -5'
12552 5' -53.6 NC_003345.1 + 57863 0.67 0.819515
Target:  5'- gCCGACUACcGACCCauaacuucCGUCcggGGCCACc -3'
miRNA:   3'- -GGCUGGUGcUUGGGaa------GUAG---UCGGUG- -5'
12552 5' -53.6 NC_003345.1 + 11549 0.67 0.818606
Target:  5'- aCCGGCugauucaCACGAACaCCaUCGUCGGCUc- -3'
miRNA:   3'- -GGCUG-------GUGCUUG-GGaAGUAGUCGGug -5'
12552 5' -53.6 NC_003345.1 + 51407 0.68 0.810334
Target:  5'- aCGuaaCGCGAACCUgugggUUCGUC-GCCGCg -3'
miRNA:   3'- gGCug-GUGCUUGGG-----AAGUAGuCGGUG- -5'
12552 5' -53.6 NC_003345.1 + 13656 0.68 0.810334
Target:  5'- gCCG-CCAUGAACUCggacauUUCAUCgaAGCUACu -3'
miRNA:   3'- -GGCuGGUGCUUGGG------AAGUAG--UCGGUG- -5'
12552 5' -53.6 NC_003345.1 + 36449 0.68 0.800973
Target:  5'- uUCGACCACG-GCCCgagCG--AGCCAUu -3'
miRNA:   3'- -GGCUGGUGCuUGGGaa-GUagUCGGUG- -5'
12552 5' -53.6 NC_003345.1 + 16826 0.7 0.678355
Target:  5'- gUCGuGCCACGuucCCCgauuguagagCAUCAGCCGCc -3'
miRNA:   3'- -GGC-UGGUGCuu-GGGaa--------GUAGUCGGUG- -5'
12552 5' -53.6 NC_003345.1 + 2575 0.71 0.646023
Target:  5'- cCCGACCuCGAAgCUUUCcgUAGCCu- -3'
miRNA:   3'- -GGCUGGuGCUUgGGAAGuaGUCGGug -5'
12552 5' -53.6 NC_003345.1 + 62114 0.71 0.602783
Target:  5'- cCCGACaACGAGCCUguuagCAUCgAGUCGCu -3'
miRNA:   3'- -GGCUGgUGCUUGGGaa---GUAG-UCGGUG- -5'
12552 5' -53.6 NC_003345.1 + 42743 0.72 0.581274
Target:  5'- aCCGACCucuguACGAcACCCcacaUCGUCGGCCuCg -3'
miRNA:   3'- -GGCUGG-----UGCU-UGGGa---AGUAGUCGGuG- -5'
12552 5' -53.6 NC_003345.1 + 62691 0.72 0.581274
Target:  5'- aCGACCAuuCGAgucaaugaacaGCCCUUCAUCGGgCGu -3'
miRNA:   3'- gGCUGGU--GCU-----------UGGGAAGUAGUCgGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.