Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12553 | 3' | -59.1 | NC_003345.1 | + | 67167 | 0.66 | 0.618631 |
Target: 5'- aCCACuCCCAccGUCGCUUUCGuuGCCGc -3' miRNA: 3'- cGGUGuGGGUuaCAGCGGGGGC--UGGC- -5' |
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12553 | 3' | -59.1 | NC_003345.1 | + | 64970 | 0.66 | 0.618631 |
Target: 5'- aCCAuUACCgGAgGUCGCCCaCGGCCu -3' miRNA: 3'- cGGU-GUGGgUUaCAGCGGGgGCUGGc -5' |
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12553 | 3' | -59.1 | NC_003345.1 | + | 45549 | 0.67 | 0.587574 |
Target: 5'- cGCCACGucgUCguGUGUCGCCUCguucgggagguUGACCGu -3' miRNA: 3'- -CGGUGU---GGguUACAGCGGGG-----------GCUGGC- -5' |
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12553 | 3' | -59.1 | NC_003345.1 | + | 45970 | 0.67 | 0.586543 |
Target: 5'- aGCCACcgGCCCAAUccucgggGUCaagCCCCGugCGa -3' miRNA: 3'- -CGGUG--UGGGUUA-------CAGcg-GGGGCugGC- -5' |
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12553 | 3' | -59.1 | NC_003345.1 | + | 66957 | 0.67 | 0.556814 |
Target: 5'- uCCACGCCUAcgGUCGCgucggucguguCUCUGACuCGg -3' miRNA: 3'- cGGUGUGGGUuaCAGCG-----------GGGGCUG-GC- -5' |
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12553 | 3' | -59.1 | NC_003345.1 | + | 63299 | 0.68 | 0.516576 |
Target: 5'- aCCACAUCgGAUGcguccUCGCUCaCCGGCCc -3' miRNA: 3'- cGGUGUGGgUUAC-----AGCGGG-GGCUGGc -5' |
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12553 | 3' | -59.1 | NC_003345.1 | + | 73759 | 0.69 | 0.477556 |
Target: 5'- cGCCAUcaAgUCGAaGUCGCCCCgGACgGg -3' miRNA: 3'- -CGGUG--UgGGUUaCAGCGGGGgCUGgC- -5' |
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12553 | 3' | -59.1 | NC_003345.1 | + | 67931 | 0.69 | 0.468027 |
Target: 5'- aGCCAUACUCGcgGUCaGUCCgaUUGACCGa -3' miRNA: 3'- -CGGUGUGGGUuaCAG-CGGG--GGCUGGC- -5' |
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12553 | 3' | -59.1 | NC_003345.1 | + | 898 | 0.69 | 0.454854 |
Target: 5'- gGCCGgaaccggagagaacUACCCGGagacGUacuuaccCGCCCCCGACCGu -3' miRNA: 3'- -CGGU--------------GUGGGUUa---CA-------GCGGGGGCUGGC- -5' |
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12553 | 3' | -59.1 | NC_003345.1 | + | 5886 | 0.69 | 0.44927 |
Target: 5'- -aCACACCaaaGGUGUCGCCgUCGuACUGg -3' miRNA: 3'- cgGUGUGGg--UUACAGCGGgGGC-UGGC- -5' |
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12553 | 3' | -59.1 | NC_003345.1 | + | 73308 | 0.69 | 0.434566 |
Target: 5'- aGCCACGCCCGAUucgacggcgaaccucGUCGuggaaCCCCUGuCCc -3' miRNA: 3'- -CGGUGUGGGUUA---------------CAGC-----GGGGGCuGGc -5' |
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12553 | 3' | -59.1 | NC_003345.1 | + | 64275 | 0.7 | 0.421039 |
Target: 5'- uGUCGCAUaugggauUCAGcguUGUCGCCCCCGuucggGCCGg -3' miRNA: 3'- -CGGUGUG-------GGUU---ACAGCGGGGGC-----UGGC- -5' |
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12553 | 3' | -59.1 | NC_003345.1 | + | 48571 | 0.7 | 0.387089 |
Target: 5'- cGUCACuaACCCGAUGaacCG-CCCCGGCCa -3' miRNA: 3'- -CGGUG--UGGGUUACa--GCgGGGGCUGGc -5' |
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12553 | 3' | -59.1 | NC_003345.1 | + | 68587 | 0.74 | 0.220106 |
Target: 5'- cCCGC-CCCAcggGUgGCCCCgCGACCGa -3' miRNA: 3'- cGGUGuGGGUua-CAgCGGGG-GCUGGC- -5' |
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12553 | 3' | -59.1 | NC_003345.1 | + | 37789 | 1.09 | 0.0007 |
Target: 5'- uGCCACACCCAAUGUCGCCCCCGACCGu -3' miRNA: 3'- -CGGUGUGGGUUACAGCGGGGGCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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