Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12553 | 5' | -55.5 | NC_003345.1 | + | 33848 | 0.66 | 0.797954 |
Target: 5'- aCG-GGUCGGUCGGCaucccguacucGGCggCGAGGu- -3' miRNA: 3'- -GCgCCAGUCAGUCG-----------CCGuaGCUCUug -5' |
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12553 | 5' | -55.5 | NC_003345.1 | + | 24477 | 0.66 | 0.797954 |
Target: 5'- -uUGGUguGUCccGGUGaGCAUCGAGGAg -3' miRNA: 3'- gcGCCAguCAG--UCGC-CGUAGCUCUUg -5' |
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12553 | 5' | -55.5 | NC_003345.1 | + | 24193 | 0.67 | 0.728456 |
Target: 5'- uCGCGGUacucggAGUCAGCGGgaaCGUCGAa--- -3' miRNA: 3'- -GCGCCAg-----UCAGUCGCC---GUAGCUcuug -5' |
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12553 | 5' | -55.5 | NC_003345.1 | + | 9767 | 0.67 | 0.728456 |
Target: 5'- -uCGGUCGGUCGGCguuguucacGGCGacUCGuGGGCu -3' miRNA: 3'- gcGCCAGUCAGUCG---------CCGU--AGCuCUUG- -5' |
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12553 | 5' | -55.5 | NC_003345.1 | + | 67288 | 0.67 | 0.738745 |
Target: 5'- gGCGGUUuugaccUCGGCGGCAaCGAaAGCg -3' miRNA: 3'- gCGCCAGuc----AGUCGCCGUaGCUcUUG- -5' |
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12553 | 5' | -55.5 | NC_003345.1 | + | 29667 | 0.67 | 0.748931 |
Target: 5'- aCGCGGcUUcGUCGGCGuagucuucGCuAUCGGGAACc -3' miRNA: 3'- -GCGCC-AGuCAGUCGC--------CG-UAGCUCUUG- -5' |
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12553 | 5' | -55.5 | NC_003345.1 | + | 45440 | 0.67 | 0.759004 |
Target: 5'- gGCGG-CGGuUCAGCucGGUAUCGuuAGCg -3' miRNA: 3'- gCGCCaGUC-AGUCG--CCGUAGCucUUG- -5' |
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12553 | 5' | -55.5 | NC_003345.1 | + | 20985 | 0.67 | 0.738745 |
Target: 5'- aGCGG-CGGUagcaacaacaaCAGCGGCGcgagcggcgacuUCGAGGAg -3' miRNA: 3'- gCGCCaGUCA-----------GUCGCCGU------------AGCUCUUg -5' |
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12553 | 5' | -55.5 | NC_003345.1 | + | 15927 | 0.67 | 0.718077 |
Target: 5'- aGaCGGUCAGUUguAGCGGaaCAgggCGAGAAa -3' miRNA: 3'- gC-GCCAGUCAG--UCGCC--GUa--GCUCUUg -5' |
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12553 | 5' | -55.5 | NC_003345.1 | + | 12332 | 0.7 | 0.537326 |
Target: 5'- -uUGGUCGGUCAGgucaGGCGUCGGGu-- -3' miRNA: 3'- gcGCCAGUCAGUCg---CCGUAGCUCuug -5' |
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12553 | 5' | -55.5 | NC_003345.1 | + | 27294 | 0.72 | 0.45578 |
Target: 5'- gGCGGUCgaaucguccGGUCGcaaguucGUGGUAUCGAGGAUg -3' miRNA: 3'- gCGCCAG---------UCAGU-------CGCCGUAGCUCUUG- -5' |
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12553 | 5' | -55.5 | NC_003345.1 | + | 24572 | 0.72 | 0.418951 |
Target: 5'- aGCGGUCGuccUCGGCGGCAggacgcCGGGAGg -3' miRNA: 3'- gCGCCAGUc--AGUCGCCGUa-----GCUCUUg -5' |
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12553 | 5' | -55.5 | NC_003345.1 | + | 2341 | 0.75 | 0.288434 |
Target: 5'- gGCGGUgUAGUCGGUGGCGagGaAGAACg -3' miRNA: 3'- gCGCCA-GUCAGUCGCCGUagC-UCUUG- -5' |
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12553 | 5' | -55.5 | NC_003345.1 | + | 18679 | 0.75 | 0.310259 |
Target: 5'- uGCGGUCGGUgGGaUGGCAU-GGGAGCc -3' miRNA: 3'- gCGCCAGUCAgUC-GCCGUAgCUCUUG- -5' |
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12553 | 5' | -55.5 | NC_003345.1 | + | 61601 | 0.76 | 0.267834 |
Target: 5'- --aGGUCGGUCAGCGGC-UUGAGGu- -3' miRNA: 3'- gcgCCAGUCAGUCGCCGuAGCUCUug -5' |
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12553 | 5' | -55.5 | NC_003345.1 | + | 37751 | 1.07 | 0.001881 |
Target: 5'- aGCGGUCAGUCAGCGGCAUCGAGAACc -3' miRNA: 3'- gCGCCAGUCAGUCGCCGUAGCUCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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