miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12558 3' -59.8 NC_003345.1 + 57570 0.66 0.593176
Target:  5'- cGCCACCucuuucagCGCGUCgGcaGACgCAUCGAGg -3'
miRNA:   3'- aUGGUGG--------GCGCGGgC--UUGgGUAGCUC- -5'
12558 3' -59.8 NC_003345.1 + 35789 0.66 0.572469
Target:  5'- aGCCGCCCGa--CCGAGCuacguCCGUgGAGg -3'
miRNA:   3'- aUGGUGGGCgcgGGCUUG-----GGUAgCUC- -5'
12558 3' -59.8 NC_003345.1 + 60788 0.66 0.572469
Target:  5'- aACCAgaUUGuCGCCU-AACCCAUCGAGg -3'
miRNA:   3'- aUGGUg-GGC-GCGGGcUUGGGUAGCUC- -5'
12558 3' -59.8 NC_003345.1 + 61455 0.66 0.562179
Target:  5'- aACUAUCCGUGaCCUGAuuggcggcaaGUCCAUCGAGa -3'
miRNA:   3'- aUGGUGGGCGC-GGGCU----------UGGGUAGCUC- -5'
12558 3' -59.8 NC_003345.1 + 59514 0.66 0.562179
Target:  5'- gGCCA-UCGCGCUCGAACCaguaAUccCGAGg -3'
miRNA:   3'- aUGGUgGGCGCGGGCUUGGg---UA--GCUC- -5'
12558 3' -59.8 NC_003345.1 + 24544 0.66 0.562179
Target:  5'- aGCgGCCCGCGaCCUGuuCCUAUCaAGg -3'
miRNA:   3'- aUGgUGGGCGC-GGGCuuGGGUAGcUC- -5'
12558 3' -59.8 NC_003345.1 + 17402 0.66 0.541756
Target:  5'- --aCugCCGUGUUCGGGCUguUCGAGg -3'
miRNA:   3'- augGugGGCGCGGGCUUGGguAGCUC- -5'
12558 3' -59.8 NC_003345.1 + 60751 0.67 0.531636
Target:  5'- aUACCACCuCGCGUUCGGGCgCGgggaUGAGu -3'
miRNA:   3'- -AUGGUGG-GCGCGGGCUUGgGUa---GCUC- -5'
12558 3' -59.8 NC_003345.1 + 63584 0.67 0.51161
Target:  5'- -gUCACUCGCGCUaCGAagGCCCG-CGAGu -3'
miRNA:   3'- auGGUGGGCGCGG-GCU--UGGGUaGCUC- -5'
12558 3' -59.8 NC_003345.1 + 36735 0.67 0.498761
Target:  5'- aGCCAcaaacguuCCCGUuguggucagucaccGCCCGAACCU-UCGAGu -3'
miRNA:   3'- aUGGU--------GGGCG--------------CGGGCUUGGGuAGCUC- -5'
12558 3' -59.8 NC_003345.1 + 868 0.68 0.472554
Target:  5'- gUACuUACCCGCcCCCGA-CCguUCGGGg -3'
miRNA:   3'- -AUG-GUGGGCGcGGGCUuGGguAGCUC- -5'
12558 3' -59.8 NC_003345.1 + 53463 0.68 0.453596
Target:  5'- gGCCGCaCCGaccCGCCgGAAUCCA-CGAGc -3'
miRNA:   3'- aUGGUG-GGC---GCGGgCUUGGGUaGCUC- -5'
12558 3' -59.8 NC_003345.1 + 27788 0.68 0.443347
Target:  5'- cACCGCCCuGCGCUCGGGCaguuugaacagcgCCAUCa-- -3'
miRNA:   3'- aUGGUGGG-CGCGGGCUUG-------------GGUAGcuc -5'
12558 3' -59.8 NC_003345.1 + 62202 0.7 0.36556
Target:  5'- cACCACCaGCaucaUCGAACCCAUCGAc -3'
miRNA:   3'- aUGGUGGgCGcg--GGCUUGGGUAGCUc -5'
12558 3' -59.8 NC_003345.1 + 70925 0.7 0.323924
Target:  5'- cACCAUCCucggcgcgguucucGCGCaCCccguacucguuGAACCCAUCGAGg -3'
miRNA:   3'- aUGGUGGG--------------CGCG-GG-----------CUUGGGUAGCUC- -5'
12558 3' -59.8 NC_003345.1 + 60647 0.71 0.304111
Target:  5'- cAUC-CCCGCGCCCGAACg---CGAGg -3'
miRNA:   3'- aUGGuGGGCGCGGGCUUGgguaGCUC- -5'
12558 3' -59.8 NC_003345.1 + 32222 0.71 0.290043
Target:  5'- gACCucgguaucaaaACCgGCGUUCGAGuCCCAUCGAGu -3'
miRNA:   3'- aUGG-----------UGGgCGCGGGCUU-GGGUAGCUC- -5'
12558 3' -59.8 NC_003345.1 + 12430 0.72 0.26345
Target:  5'- uUGCCGucUCCGCGCuuGuuuUCCAUCGAGg -3'
miRNA:   3'- -AUGGU--GGGCGCGggCuu-GGGUAGCUC- -5'
12558 3' -59.8 NC_003345.1 + 68894 0.77 0.122317
Target:  5'- gGCgCACCgCGCGUCCGAACaCAUCGAGu -3'
miRNA:   3'- aUG-GUGG-GCGCGGGCUUGgGUAGCUC- -5'
12558 3' -59.8 NC_003345.1 + 40616 1.06 0.000907
Target:  5'- aUACCACCCGCGCCCGAACCCAUCGAGu -3'
miRNA:   3'- -AUGGUGGGCGCGGGCUUGGGUAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.