miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12558 5' -52.9 NC_003345.1 + 71633 0.66 0.892275
Target:  5'- gCCCgc-UCAGCGAACGCcUUGCGGGu- -3'
miRNA:   3'- -GGGagcAGUCGUUUGCG-AGUGCUCuu -5'
12558 5' -52.9 NC_003345.1 + 34790 0.66 0.891558
Target:  5'- uCgCUCGUCGGgAAgaacaucgaagacGCGCUCGcCGGGAc -3'
miRNA:   3'- -GgGAGCAGUCgUU-------------UGCGAGU-GCUCUu -5'
12558 5' -52.9 NC_003345.1 + 24579 0.66 0.884989
Target:  5'- gUCCUCGgCGGCAgGACGC-CGgGAGGu -3'
miRNA:   3'- -GGGAGCaGUCGU-UUGCGaGUgCUCUu -5'
12558 5' -52.9 NC_003345.1 + 38761 0.66 0.8835
Target:  5'- gCUUCGUCGGCGugaacuccgaguGCGCccaucCACGGGAAc -3'
miRNA:   3'- gGGAGCAGUCGUu-----------UGCGa----GUGCUCUU- -5'
12558 5' -52.9 NC_003345.1 + 25722 0.67 0.861611
Target:  5'- aCUUCGagCAGauuCGGACGCUCGCaGAGAAc -3'
miRNA:   3'- gGGAGCa-GUC---GUUUGCGAGUG-CUCUU- -5'
12558 5' -52.9 NC_003345.1 + 46603 0.67 0.860794
Target:  5'- cCCCUgCGcCgAGCAGAUGCUCguggaguACGAGGc -3'
miRNA:   3'- -GGGA-GCaG-UCGUUUGCGAG-------UGCUCUu -5'
12558 5' -52.9 NC_003345.1 + 15270 0.67 0.853334
Target:  5'- cCCCaUCGg-AGCAAACGCUCGgGAc-- -3'
miRNA:   3'- -GGG-AGCagUCGUUUGCGAGUgCUcuu -5'
12558 5' -52.9 NC_003345.1 + 62694 0.67 0.851651
Target:  5'- aCgUCGUCAGCAAuucgagcgcccuCGCUUucaucaGCGAGAGg -3'
miRNA:   3'- gGgAGCAGUCGUUu-----------GCGAG------UGCUCUU- -5'
12558 5' -52.9 NC_003345.1 + 61152 0.67 0.844827
Target:  5'- aCCCgagCGUCGGCGgcgguaauggucGGCGCUCucggagUGAGAc -3'
miRNA:   3'- -GGGa--GCAGUCGU------------UUGCGAGu-----GCUCUu -5'
12558 5' -52.9 NC_003345.1 + 39643 0.68 0.827156
Target:  5'- cCUCUCGUgguaCAGCAucCGC-CACGGGGu -3'
miRNA:   3'- -GGGAGCA----GUCGUuuGCGaGUGCUCUu -5'
12558 5' -52.9 NC_003345.1 + 57574 0.68 0.81801
Target:  5'- aCCUcuuucagcgCGUCGGCAGACGCau-CGAGGu -3'
miRNA:   3'- gGGA---------GCAGUCGUUUGCGaguGCUCUu -5'
12558 5' -52.9 NC_003345.1 + 53639 0.69 0.759427
Target:  5'- uCCgUUCGgaaguUCAGCAAGCGUUCcCGAGAc -3'
miRNA:   3'- -GG-GAGC-----AGUCGUUUGCGAGuGCUCUu -5'
12558 5' -52.9 NC_003345.1 + 39537 0.69 0.749146
Target:  5'- aCCC-CGU-GGCGGAUGCUguacCACGAGAGg -3'
miRNA:   3'- -GGGaGCAgUCGUUUGCGA----GUGCUCUU- -5'
12558 5' -52.9 NC_003345.1 + 73826 0.69 0.749146
Target:  5'- aUCUCGUCGGCGuucuugaacgucGGCGUUUcagaGCGAGAAu -3'
miRNA:   3'- gGGAGCAGUCGU------------UUGCGAG----UGCUCUU- -5'
12558 5' -52.9 NC_003345.1 + 40477 0.7 0.696196
Target:  5'- uUCUCGUgAGCGuuUGCUgACGAGGGg -3'
miRNA:   3'- gGGAGCAgUCGUuuGCGAgUGCUCUU- -5'
12558 5' -52.9 NC_003345.1 + 2178 0.7 0.685376
Target:  5'- aCCUCGUgAGCuaa-GCUCACGGuGGAg -3'
miRNA:   3'- gGGAGCAgUCGuuugCGAGUGCU-CUU- -5'
12558 5' -52.9 NC_003345.1 + 22815 0.71 0.630732
Target:  5'- gCUCUCGUUgugAGCAucGACGCUUcCGAGGAg -3'
miRNA:   3'- -GGGAGCAG---UCGU--UUGCGAGuGCUCUU- -5'
12558 5' -52.9 NC_003345.1 + 22934 0.72 0.558814
Target:  5'- uCCUUCGUCAGCuccucggaagcgucGAUGCUCacaACGAGAGc -3'
miRNA:   3'- -GGGAGCAGUCGu-------------UUGCGAG---UGCUCUU- -5'
12558 5' -52.9 NC_003345.1 + 28039 0.76 0.376739
Target:  5'- uCCUUCGUCuccugagggAGUccGACGCUCACGAGAAc -3'
miRNA:   3'- -GGGAGCAG---------UCGu-UUGCGAGUGCUCUU- -5'
12558 5' -52.9 NC_003345.1 + 40580 1.09 0.002717
Target:  5'- cCCCUCGUCAGCAAACGCUCACGAGAAg -3'
miRNA:   3'- -GGGAGCAGUCGUUUGCGAGUGCUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.