Results 1 - 18 of 18 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12559 | 3' | -58.8 | NC_003345.1 | + | 1442 | 0.72 | 0.346317 |
Target: 5'- aCCACGGGGGcCGUCUCC--CCCGCu- -3' miRNA: 3'- -GGUGCUCCUuGCAGGGGcuGGGCGuc -5' |
|||||||
12559 | 3' | -58.8 | NC_003345.1 | + | 2421 | 0.68 | 0.545181 |
Target: 5'- uCCGCGAGGGGCuUCacaCCGAaUCCGCc- -3' miRNA: 3'- -GGUGCUCCUUGcAGg--GGCU-GGGCGuc -5' |
|||||||
12559 | 3' | -58.8 | NC_003345.1 | + | 2764 | 0.7 | 0.457804 |
Target: 5'- aCUACGAGGAACacaucgagcUUCCCGAgCCGgAGg -3' miRNA: 3'- -GGUGCUCCUUGc--------AGGGGCUgGGCgUC- -5' |
|||||||
12559 | 3' | -58.8 | NC_003345.1 | + | 4252 | 0.66 | 0.678383 |
Target: 5'- uCCACGAGaGGCaGUCUCCGGuguCCCaCAGg -3' miRNA: 3'- -GGUGCUCcUUG-CAGGGGCU---GGGcGUC- -5' |
|||||||
12559 | 3' | -58.8 | NC_003345.1 | + | 13429 | 0.66 | 0.678383 |
Target: 5'- aCCACGAagugugugGGAACGagacUCCCGGCCCcCGa -3' miRNA: 3'- -GGUGCU--------CCUUGCa---GGGGCUGGGcGUc -5' |
|||||||
12559 | 3' | -58.8 | NC_003345.1 | + | 21748 | 0.75 | 0.22084 |
Target: 5'- aCgACGAGGGGC-UUCCCGAggguguCCCGCAGg -3' miRNA: 3'- -GgUGCUCCUUGcAGGGGCU------GGGCGUC- -5' |
|||||||
12559 | 3' | -58.8 | NC_003345.1 | + | 22088 | 0.68 | 0.545181 |
Target: 5'- cCCACGAcGaGAACGgcgaCCCCGuugacgACCCGgAGg -3' miRNA: 3'- -GGUGCU-C-CUUGCa---GGGGC------UGGGCgUC- -5' |
|||||||
12559 | 3' | -58.8 | NC_003345.1 | + | 30628 | 0.67 | 0.616618 |
Target: 5'- uUugGAGG--CGUCCCgUGGCCCGUg- -3' miRNA: 3'- gGugCUCCuuGCAGGG-GCUGGGCGuc -5' |
|||||||
12559 | 3' | -58.8 | NC_003345.1 | + | 31511 | 0.66 | 0.657856 |
Target: 5'- uCCG-GGGGAACGUagcaaCCCGACCU-CGGu -3' miRNA: 3'- -GGUgCUCCUUGCAg----GGGCUGGGcGUC- -5' |
|||||||
12559 | 3' | -58.8 | NC_003345.1 | + | 32448 | 0.71 | 0.362153 |
Target: 5'- gCCuuGGGGAACGcuUCCCCGACgCCGa-- -3' miRNA: 3'- -GGugCUCCUUGC--AGGGGCUG-GGCguc -5' |
|||||||
12559 | 3' | -58.8 | NC_003345.1 | + | 42751 | 1 | 0.004269 |
Target: 5'- uCCACGAGGAA-GUCCCCGACCCGCAGg -3' miRNA: 3'- -GGUGCUCCUUgCAGGGGCUGGGCGUC- -5' |
|||||||
12559 | 3' | -58.8 | NC_003345.1 | + | 49166 | 0.72 | 0.316156 |
Target: 5'- aCUACGAGGAcgauuggagaGCGUCCCCcuCCgCGCAu -3' miRNA: 3'- -GGUGCUCCU----------UGCAGGGGcuGG-GCGUc -5' |
|||||||
12559 | 3' | -58.8 | NC_003345.1 | + | 49263 | 0.66 | 0.688592 |
Target: 5'- -aGCGAGG-ACGcUCCCGACCaCGUu- -3' miRNA: 3'- ggUGCUCCuUGCaGGGGCUGG-GCGuc -5' |
|||||||
12559 | 3' | -58.8 | NC_003345.1 | + | 59373 | 0.66 | 0.678383 |
Target: 5'- -aGCGAGGuAGCcaCCaCCGACCaGCAGa -3' miRNA: 3'- ggUGCUCC-UUGcaGG-GGCUGGgCGUC- -5' |
|||||||
12559 | 3' | -58.8 | NC_003345.1 | + | 60917 | 0.66 | 0.688592 |
Target: 5'- gCCAU----AACGUCCCCGGCCUGaAGg -3' miRNA: 3'- -GGUGcuccUUGCAGGGGCUGGGCgUC- -5' |
|||||||
12559 | 3' | -58.8 | NC_003345.1 | + | 63386 | 0.67 | 0.62693 |
Target: 5'- uCCACGAGGucaa-CCgCGACCgCGUAGa -3' miRNA: 3'- -GGUGCUCCuugcaGGgGCUGG-GCGUC- -5' |
|||||||
12559 | 3' | -58.8 | NC_003345.1 | + | 67261 | 0.72 | 0.343985 |
Target: 5'- -aGCGAcggugggaguggugGGAACGaCCCCGACCCGUc- -3' miRNA: 3'- ggUGCU--------------CCUUGCaGGGGCUGGGCGuc -5' |
|||||||
12559 | 3' | -58.8 | NC_003345.1 | + | 74553 | 0.67 | 0.637246 |
Target: 5'- aUAgGuGGAAUGgccgCCCCGACCUccuuGCGGa -3' miRNA: 3'- gGUgCuCCUUGCa---GGGGCUGGG----CGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home