miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12559 5' -59.1 NC_003345.1 + 50787 0.66 0.600768
Target:  5'- cGGCgGCgguggaaaCGgCGGGGACGCUGGCGg- -3'
miRNA:   3'- -UCGgCGa-------GUgGUCUCUGCGGCUGCaa -5'
12559 5' -59.1 NC_003345.1 + 59689 0.66 0.600768
Target:  5'- --aCGCUCAUCGGAGugGUgcUGGCGa- -3'
miRNA:   3'- ucgGCGAGUGGUCUCugCG--GCUGCaa -5'
12559 5' -59.1 NC_003345.1 + 21117 0.67 0.528029
Target:  5'- cAGUCcCUCAUCGuGGACGCUGACGa- -3'
miRNA:   3'- -UCGGcGAGUGGUcUCUGCGGCUGCaa -5'
12559 5' -59.1 NC_003345.1 + 5457 0.67 0.528029
Target:  5'- gAGuuGUUCACC---GACGCCGAUGa- -3'
miRNA:   3'- -UCggCGAGUGGucuCUGCGGCUGCaa -5'
12559 5' -59.1 NC_003345.1 + 20240 0.67 0.507807
Target:  5'- -uCCGCUCGCCGGGGACggacuuGCC-ACGg- -3'
miRNA:   3'- ucGGCGAGUGGUCUCUG------CGGcUGCaa -5'
12559 5' -59.1 NC_003345.1 + 21716 0.67 0.49782
Target:  5'- cAGCgGCUCGCuCGGuGGCGacuCCGGCGg- -3'
miRNA:   3'- -UCGgCGAGUG-GUCuCUGC---GGCUGCaa -5'
12559 5' -59.1 NC_003345.1 + 38145 0.68 0.487921
Target:  5'- cGaCCGaaCACC-GuGACGCCGACGUg -3'
miRNA:   3'- uC-GGCgaGUGGuCuCUGCGGCUGCAa -5'
12559 5' -59.1 NC_003345.1 + 26619 0.68 0.478116
Target:  5'- uAGCCGCUCgcaagauagacACCGGAGA-GCCGGucUGUc -3'
miRNA:   3'- -UCGGCGAG-----------UGGUCUCUgCGGCU--GCAa -5'
12559 5' -59.1 NC_003345.1 + 9591 0.69 0.412436
Target:  5'- gAGUCGCUUggacaAUCGGAGugGCgGAUGUa -3'
miRNA:   3'- -UCGGCGAG-----UGGUCUCugCGgCUGCAa -5'
12559 5' -59.1 NC_003345.1 + 72959 0.79 0.092916
Target:  5'- cGCCGCUCuACCaAGAGACGgCGACGa- -3'
miRNA:   3'- uCGGCGAG-UGG-UCUCUGCgGCUGCaa -5'
12559 5' -59.1 NC_003345.1 + 42714 1.05 0.001099
Target:  5'- uAGCCGCUCACCAGAGACGCCGACGUUg -3'
miRNA:   3'- -UCGGCGAGUGGUCUCUGCGGCUGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.