miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1256 3' -52.5 NC_001317.1 + 16 0.74 0.244202
Target:  5'- -gCAuugCGCGCCAGAggUGGCGCGu- -3'
miRNA:   3'- ugGUuuaGCGCGGUCUa-ACCGCGUug -5'
1256 3' -52.5 NC_001317.1 + 1806 0.7 0.413705
Target:  5'- aGCUgcGUUGCGCCAaucUGGCGCGAUu -3'
miRNA:   3'- -UGGuuUAGCGCGGUcuaACCGCGUUG- -5'
1256 3' -52.5 NC_001317.1 + 1867 1.1 0.000588
Target:  5'- cACCAAAUCGCGCCAGAUUGGCGCAACg -3'
miRNA:   3'- -UGGUUUAGCGCGGUCUAACCGCGUUG- -5'
1256 3' -52.5 NC_001317.1 + 3265 0.91 0.015212
Target:  5'- cUCAAAUCcCGCCAGAUUGGCGCGACg -3'
miRNA:   3'- uGGUUUAGcGCGGUCUAACCGCGUUG- -5'
1256 3' -52.5 NC_001317.1 + 4430 0.66 0.674291
Target:  5'- uCCAGuUCG-GCCAGcgUGGCGgCGGa -3'
miRNA:   3'- uGGUUuAGCgCGGUCuaACCGC-GUUg -5'
1256 3' -52.5 NC_001317.1 + 7272 0.71 0.365143
Target:  5'- gACaCGAuUUGCGCCAGGUauuacgGGCGCAc- -3'
miRNA:   3'- -UG-GUUuAGCGCGGUCUAa-----CCGCGUug -5'
1256 3' -52.5 NC_001317.1 + 8240 0.7 0.413704
Target:  5'- cGCCAGccgUGCGCCAGAU-GGUGacCAGCu -3'
miRNA:   3'- -UGGUUua-GCGCGGUCUAaCCGC--GUUG- -5'
1256 3' -52.5 NC_001317.1 + 9667 0.75 0.200172
Target:  5'- cACCGGAg-GCGCguGAuUUGGCGCGGCu -3'
miRNA:   3'- -UGGUUUagCGCGguCU-AACCGCGUUG- -5'
1256 3' -52.5 NC_001317.1 + 14828 0.66 0.65063
Target:  5'- gACCGAGU-GCGCgGGcggUGGCGUAu- -3'
miRNA:   3'- -UGGUUUAgCGCGgUCua-ACCGCGUug -5'
1256 3' -52.5 NC_001317.1 + 16899 0.68 0.510277
Target:  5'- cACUGGcgCGCGUCAGu---GCGCAGCa -3'
miRNA:   3'- -UGGUUuaGCGCGGUCuaacCGCGUUG- -5'
1256 3' -52.5 NC_001317.1 + 23449 0.67 0.603171
Target:  5'- -aCGAAgCGUGCCGGGcuUUuGCGCAGCg -3'
miRNA:   3'- ugGUUUaGCGCGGUCU--AAcCGCGUUG- -5'
1256 3' -52.5 NC_001317.1 + 30511 0.68 0.505771
Target:  5'- cCCGuucugguugugCGuCGCCAGAgcUGGCGCGGCu -3'
miRNA:   3'- uGGUuua--------GC-GCGGUCUa-ACCGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.