Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12560 | 3' | -55.6 | NC_003345.1 | + | 71005 | 0.67 | 0.739659 |
Target: 5'- gCAGUAAacuccagaugagcguCGGuCGaAACCGGCU-UCGGGCu -3' miRNA: 3'- -GUCAUU---------------GCC-GC-UUGGCCGGuAGCCUG- -5' |
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12560 | 3' | -55.6 | NC_003345.1 | + | 68405 | 0.71 | 0.483852 |
Target: 5'- aAGUGgacgGCGGCGAGCgGGUucguCAUCGaGACa -3' miRNA: 3'- gUCAU----UGCCGCUUGgCCG----GUAGC-CUG- -5' |
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12560 | 3' | -55.6 | NC_003345.1 | + | 63669 | 0.67 | 0.745761 |
Target: 5'- gAGUGGgGGCGcuCCuGCCgacgugggacucGUCGGACa -3' miRNA: 3'- gUCAUUgCCGCuuGGcCGG------------UAGCCUG- -5' |
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12560 | 3' | -55.6 | NC_003345.1 | + | 60278 | 0.66 | 0.775635 |
Target: 5'- cCGGUGcugguGCGGCGuucAUCGGCC-UCGGu- -3' miRNA: 3'- -GUCAU-----UGCCGCu--UGGCCGGuAGCCug -5' |
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12560 | 3' | -55.6 | NC_003345.1 | + | 55759 | 0.67 | 0.704453 |
Target: 5'- --cUGACGGCGGAUaCGGUCA-CGGAa -3' miRNA: 3'- gucAUUGCCGCUUG-GCCGGUaGCCUg -5' |
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12560 | 3' | -55.6 | NC_003345.1 | + | 54045 | 0.66 | 0.765803 |
Target: 5'- ---cGGCGGCGAgaACCGcgaGUCGGACg -3' miRNA: 3'- gucaUUGCCGCU--UGGCcggUAGCCUG- -5' |
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12560 | 3' | -55.6 | NC_003345.1 | + | 50353 | 0.66 | 0.785325 |
Target: 5'- uGGUGGCGGUGGagguGCUGGCgGcuccuUCGGGg -3' miRNA: 3'- gUCAUUGCCGCU----UGGCCGgU-----AGCCUg -5' |
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12560 | 3' | -55.6 | NC_003345.1 | + | 48688 | 0.66 | 0.804244 |
Target: 5'- gAGUGAaCGGCuGGCCGGggcgguUCAUCGGGu -3' miRNA: 3'- gUCAUU-GCCGcUUGGCC------GGUAGCCUg -5' |
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12560 | 3' | -55.6 | NC_003345.1 | + | 44957 | 1.09 | 0.001504 |
Target: 5'- gCAGUAACGGCGAACCGGCCAUCGGACu -3' miRNA: 3'- -GUCAUUGCCGCUUGGCCGGUAGCCUG- -5' |
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12560 | 3' | -55.6 | NC_003345.1 | + | 40060 | 0.68 | 0.651386 |
Target: 5'- ---cAGCGGCucGAACgCGGCuCGUCGGAg -3' miRNA: 3'- gucaUUGCCG--CUUG-GCCG-GUAGCCUg -5' |
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12560 | 3' | -55.6 | NC_003345.1 | + | 36825 | 0.66 | 0.775635 |
Target: 5'- uGGUAGuucacgccgUGGU-AGCCGGUCGUCGGAa -3' miRNA: 3'- gUCAUU---------GCCGcUUGGCCGGUAGCCUg -5' |
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12560 | 3' | -55.6 | NC_003345.1 | + | 36331 | 0.66 | 0.775635 |
Target: 5'- aUAGaGACGGCGAAggaaUGGCuCGcUCGGGCc -3' miRNA: 3'- -GUCaUUGCCGCUUg---GCCG-GU-AGCCUG- -5' |
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12560 | 3' | -55.6 | NC_003345.1 | + | 33181 | 0.66 | 0.765803 |
Target: 5'- uCGGUuuccucCGGCGggUUGGCgGUCGGcCc -3' miRNA: 3'- -GUCAuu----GCCGCuuGGCCGgUAGCCuG- -5' |
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12560 | 3' | -55.6 | NC_003345.1 | + | 26558 | 0.66 | 0.794865 |
Target: 5'- uGGUAGCGGCGGAggugggUCGGCauccaGUCGuACu -3' miRNA: 3'- gUCAUUGCCGCUU------GGCCGg----UAGCcUG- -5' |
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12560 | 3' | -55.6 | NC_003345.1 | + | 11630 | 0.66 | 0.794865 |
Target: 5'- cCGGUGuuccuCGGgGAA-CGG-CAUCGGACg -3' miRNA: 3'- -GUCAUu----GCCgCUUgGCCgGUAGCCUG- -5' |
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12560 | 3' | -55.6 | NC_003345.1 | + | 8166 | 0.67 | 0.735571 |
Target: 5'- -----cCGGaUGAACCgGGUCGUCGGGCu -3' miRNA: 3'- gucauuGCC-GCUUGG-CCGGUAGCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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